Regulog MetR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | 2 | 2 |
| Comamonas testosteroni KF-1 | 2 | 2 |
| Delftia acidovorans SPH-1 | 1 | 1 |
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 2 | 2 |
| Verminephrobacter eiseniae EF01-2 | 2 | 2 |
| Methylibium petroleiphilum PM1 | ||
| Leptothrix cholodnii SP-6 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| metR |
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Acidovorax sp. JS42 Site: position = -13 score = 4.02823 sequence = TTGAATATTTCTAAT Site: position = -44 score = 3.36743 sequence = ATGATTCAAACGAAA Gene: Ajs_1631: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Comamonas testosteroni KF-1 Site: position = -17 score = 4.62421 sequence = ATGAATTGTGTTCAC Gene: CtesDRAFT_5279: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Delftia acidovorans SPH-1 Site: position = -19 score = 4.23049 sequence = ATGAATTTTTCTCAC Gene: Daci_5860: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Variovorax paradoxus S110 Site: position = -13 score = 4.62421 sequence = TTGAAATTCATTCAT Site: position = -44 score = 3.36743 sequence = ATGATTCAAACGAAA Gene: Vapar_3249: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Verminephrobacter eiseniae EF01-2 Site: position = -13 score = 5.2472 sequence = TTGAATAGTATTCAT Gene: Veis_4448: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
| CRON 2. | ||||||||||||
| metE |
|
*
Acidovorax sp. JS42 Site: position = -99 score = 4.02823 sequence = ATTAGAAATATTCAA Site: position = -68 score = 3.36743 sequence = TTTCGTTTGAATCAT Gene: Ajs_1630: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Comamonas testosteroni KF-1 Site: position = -21 score = 4.62421 sequence = GTGAACACAATTCAT Gene: CtesDRAFT_5278: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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*
Variovorax paradoxus S110 Site: position = -103 score = 4.62421 sequence = ATGAATGAATTTCAA Site: position = -72 score = 3.36743 sequence = TTTCGTTTGAATCAT Gene: Vapar_3248: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Verminephrobacter eiseniae EF01-2 Site: position = -72 score = 5.2472 sequence = ATGAATACTATTCAA Gene: Veis_4447: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |