Regulog MetR - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Xylella fastidiosa 9a5c | ||
| Xanthomonas axonopodis pv. citri str. 306 | 6 | 2 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | 5 | 2 |
| Stenotrophomonas maltophilia K279a | 5 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| metR |
|
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -19 score = 5.43369 sequence = ATGAATTCGGATCAT Gene: XAC0333: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -19 score = 5.43369 sequence = ATGAATTCGGATCAT Gene: XCC0315: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Stenotrophomonas maltophilia K279a Site: position = -19 score = 4.95353 sequence = ATGAGCAGGATTCAT Gene: Smlt2583: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
| PF02677 |
Gene: XF2273: Protein of unknown function DUF208 |
Gene: XAC0332: Protein of unknown function DUF208 |
|
Gene: Smlt0258: Protein of unknown function DUF208 |
Protein of unknown function DUF208 |
| metF |
|
Gene: XAC0331: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: XCC0314: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Smlt2582: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| CRON 2. | |||||
| PF03358 |
|
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -186 score = 5.43369 sequence = ATGATCCGAATTCAT Gene: XAC0334: NADPH-dependent FMN reductase |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -105 score = 5.43369 sequence = ATGATCCGAATTCAT Gene: XCC0316: NADPH-dependent FMN reductase |
*
Stenotrophomonas maltophilia K279a Site: position = -71 score = 4.95353 sequence = ATGAATCCTGCTCAT Gene: Smlt2584: NADPH-dependent FMN reductase |
NADPH-dependent FMN reductase |
| PF08908 |
|
Gene: XAC0335: Protein of unknown function DUF1852 |
Gene: XCC0317: Protein of unknown function DUF1852 |
Gene: Smlt2585: Protein of unknown function DUF1852 |
Protein of unknown function DUF1852 |
| metE |
|
Gene: XAC0336: 5-methyltetrahydropteroyltriglutamate--homocy5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)ent isozyme) (cobalamin-independent methionine synthase) |
Gene: XCC0318: 5-methyltetrahydropteroyltriglutamate--homocy5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)ent isozyme) (cobalamin-independent methionine synthase) |
Gene: Smlt2586: 5-methyltetrahydropteroyltriglutamate--homocy5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)ent isozyme) (cobalamin-independent methionine synthase) |
5-methyltetrahydropteroyltriglutamate--homocy5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)ent isozyme) (cobalamin-independent methionine synthase) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |