Regulog ManR1 - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Mannosides utilization; Mannose utilization |
| Effector: | Mannose |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By TF family - LacI
- By effector - Mannose
- By pathway - Mannosides utilization
- By pathway - Mannose utilization
| Genome | Genes | Operons |
|---|---|---|
| Alteromonadales bacterium TW-7 | 1 | 1 |
| Alteromonas macleodii 'Deep ecotype' | ||
| Colwellia psychrerythraea 34H | 7 | 3 |
| Glaciecola sp. HTCC2999 | ||
| Idiomarina baltica OS145 | ||
| Idiomarina loihiensis L2TR | ||
| Pseudoalteromonas atlantica T6c | ||
| Pseudoalteromonas haloplanktis TAC125 | ||
| Pseudoalteromonas tunicata D2 | 2 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| mnnA1 |
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*2
Colwellia psychrerythraea 34H Gene: CPS_2650: Alpha-1,2-mannosidase Site: position = -40 score = 6.84481 sequence = TAATTGGAACGTTCCAAAAA Gene: CPS_2651: Alpha-1,2-mannosidase |
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3
Pseudoalteromonas atlantica T6c Gene: Patl_0117: Alpha-1,2-mannosidase Gene: Patl_0116: Alpha-1,2-mannosidase Gene: Patl_0120: Alpha-1,2-mannosidase |
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*
Pseudoalteromonas tunicata D2 Site: position = -31 score = 6.01358 sequence = TGCTTGGAACGATCCAATTA Gene: PTD2_02161: Alpha-1,2-mannosidase |
Alpha-1,2-mannosidase |
| manP1 |
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Alteromonadales bacterium TW-7 Site: position = -87 score = 6.23068 sequence = AATTTGGAACGTTCTAATTA Gene: ATW7_00410: Predicted mannose transporter, GGP family |
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Gene: CPS_2649: Predicted mannose transporter, GGP family |
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Gene: Patl_0119: Predicted mannose transporter, GGP family |
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Gene: PTD2_02166: Predicted mannose transporter, GGP family |
Predicted mannose transporter, GGP family |
| manK |
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Gene: CPS_2648: Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) |
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Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) |
| manI |
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Gene: MADE_01636: D-mannose isomerase (EC 5.3.1.7) |
Gene: CPS_2647: D-mannose isomerase (EC 5.3.1.7) |
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Gene: Patl_0118: D-mannose isomerase (EC 5.3.1.7) |
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*
Pseudoalteromonas tunicata D2 Site: position = -69 score = 6.03678 sequence = TTATTGGAGCGTTCCAAAAG Gene: PTD2_02171: D-mannose isomerase (EC 5.3.1.7) |
D-mannose isomerase (EC 5.3.1.7) |
| CRON 2. | ||||||||||
| manR1 |
Gene: ATW7_02272: Transcriptional regulator of mannoside utilization, LacI family |
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*
Colwellia psychrerythraea 34H Site: position = -102 score = 6.84481 sequence = TTTTTGGAACGTTCCAATTA Gene: CPS_2652: Transcriptional regulator of mannoside utilization, LacI family |
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Gene: PTD2_03216: Transcriptional regulator of mannoside utilization, LacI family |
Transcriptional regulator of mannoside utilization, LacI family |
| CRON 3. | ||||||||||
| omp(Man) |
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*
Colwellia psychrerythraea 34H Site: position = -152 score = 6.38637 sequence = GCATTGGAACGTTCCAATTA Site: position = -64 score = 5.52903 sequence = ATAACGGAACGTTCCACTTA Gene: CPS_2653: Mannosides-regulated TonB-dependent outer membrane receptor |
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Gene: Patl_0122: Mannosides-regulated TonB-dependent outer membrane receptor |
Gene: PSHAb0165: Mannosides-regulated TonB-dependent outer membrane receptor |
Gene: PTD2_22047: Mannosides-regulated TonB-dependent outer membrane receptor |
Mannosides-regulated TonB-dependent outer membrane receptor |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |