Regulog IolR - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Inositol utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By TF family - GntR/Others
- By pathway - Inositol utilization
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | ||
| Rhodococcus erythropolis PR4 | 10 | 3 |
| Rhodococcus opacus B4 | 17 | 6 |
| Rhodococcus sp. RHA1 | 17 | 6 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| iolR |
|
*
Rhodococcus erythropolis PR4 Site: position = -134 score = 3.5459 sequence = TGCTTGTCAAGACTGACT Site: position = -35 score = 5.15013 sequence = AGTTTGTCTGGACATTAT Gene: RER_20220: Inositol utilization transcriptional regulator, GntR family |
*
Rhodococcus opacus B4 Site: position = -123 score = 3.3204 sequence = CTCCTGTCAAGACTTTGT Site: position = -112 score = 5.24232 sequence = ACTTTGTCCTGACATTAT Gene: ROP_10650: Inositol utilization transcriptional regulator, GntR family |
*
Rhodococcus sp. RHA1 Site: position = -122 score = 3.3204 sequence = CTCCTGTCAAGACTTTGT Site: position = -111 score = 5.24232 sequence = ACTTTGTCCTGACATTAT Gene: RHA1_ro01349: Inositol utilization transcriptional regulator, GntR family |
Inositol utilization transcriptional regulator, GntR family |
| iolG3 |
|
Gene: RER_20230: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
*
Rhodococcus opacus B4 Site: position = -89 score = 5.0002 sequence = ACTTTGTCCGCACAAACG Gene: ROP_36840: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
*
Rhodococcus sp. RHA1 Site: position = -89 score = 4.94147 sequence = ACTTTGTCAGCACAAACG Gene: RHA1_ro03822: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
| iolP |
|
Gene: RER_20240: major facilitator family sugar permease |
Gene: ROP_10640: major facilitator family sugar permease |
Gene: RHA1_ro01348: major facilitator family sugar permease |
major facilitator family sugar permease |
| CRON 2. | |||||
| iolTA |
|
*
Rhodococcus erythropolis PR4 Site: position = -112 score = 4.99751 sequence = CTAATGTCAGAACAAACT Gene: RER_20340: Inositol ABC transport system sugar-binding protein |
*
Rhodococcus opacus B4 Site: position = -104 score = 5.08689 sequence = CTAATGTCCAGACAAACT Gene: ROP_10630: Inositol ABC transport system sugar-binding protein |
*
Rhodococcus sp. RHA1 Site: position = -105 score = 5.08689 sequence = CTAATGTCCAGACAAACT Gene: RHA1_ro01347: Inositol ABC transport system sugar-binding protein |
Inositol ABC transport system sugar-binding protein |
| iolTB |
|
Gene: RER_20350: Inositol ABC transport system permease protein |
Gene: ROP_10620: Inositol ABC transport system permease protein |
Gene: RHA1_ro01346: Inositol ABC transport system permease protein |
Inositol ABC transport system permease protein |
| iolTC |
|
Gene: RER_20360: Inositol ABC transport system ATP-binding protein |
Gene: ROP_10610: Inositol ABC transport system ATP-binding protein |
Gene: RHA1_ro01345: Inositol ABC transport system ATP-binding protein |
Inositol ABC transport system ATP-binding protein |
| CRON 3. | |||||
| oxiA |
|
|
*
Rhodococcus opacus B4 Site: position = -26 score = 4.29341 sequence = CGAATGTCTTAACATATA Gene: ROP_03440: putative myo-inositol 2-dehydrogenase |
*
Rhodococcus sp. RHA1 Site: position = -26 score = 4.29341 sequence = CGAATGTCTTAACATATA Gene: RHA1_ro00218: putative myo-inositol 2-dehydrogenase |
putative myo-inositol 2-dehydrogenase |
| CRON 4. | |||||
| iolT |
|
|
*2
Rhodococcus opacus B4 Site: position = -37 score = 4.93914 sequence = GCTTTGTCCGGACATAAA Gene: ROP_37590: Myo-inositol transporter, MFS family Gene: ROP_05270: Myo-inositol transporter, MFS family |
*
Rhodococcus sp. RHA1 Site: position = -61 score = 4.65508 sequence = GCTTTGTTCGGACATAAA Gene: RHA1_ro03889: Myo-inositol transporter, MFS family |
Myo-inositol transporter, MFS family |
| usp |
|
|
2
Rhodococcus opacus B4 Gene: ROP_37580: universal stress protein Gene: ROP_05280: universal stress protein |
Gene: RHA1_ro03888: universal stress protein |
universal stress protein |
| iolG4 |
|
|
Gene: ROP_37560: possible inositol 2-dehydrogenase |
Gene: RHA1_ro03887: possible inositol 2-dehydrogenase |
possible inositol 2-dehydrogenase |
| iolG2 |
|
|
Gene: ROP_37550: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Gene: RHA1_ro03886: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
| CRON 5. | |||||
| iolC |
|
*
Rhodococcus erythropolis PR4 Site: position = -8 score = 3.5459 sequence = AGTCAGTCTTGACAAGCA Site: position = -107 score = 5.15013 sequence = ATAATGTCCAGACAAACT Gene: RER_20210: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
*
Rhodococcus opacus B4 Site: position = -109 score = 5.24232 sequence = ATAATGTCAGGACAAAGT Site: position = -98 score = 3.3204 sequence = ACAAAGTCTTGACAGGAG Gene: ROP_10660: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
*
Rhodococcus sp. RHA1 Site: position = -37 score = 5.24232 sequence = ATAATGTCAGGACAAAGT Site: position = -26 score = 3.3204 sequence = ACAAAGTCTTGACAGGAG Gene: RHA1_ro01350: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
| iolJ |
|
Gene: RER_20200: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
Gene: ROP_10670: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
Gene: RHA1_ro01351: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
| iolB |
|
Gene: RER_20190: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
Gene: ROP_10680: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
Gene: RHA1_ro01352: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
| iolD |
|
Gene: RER_20180: Epi-inositol hydrolase (EC 3.7.1.-) |
Gene: ROP_10690: Epi-inositol hydrolase (EC 3.7.1.-) |
Gene: RHA1_ro01353: Epi-inositol hydrolase (EC 3.7.1.-) |
Epi-inositol hydrolase (EC 3.7.1.-) |
| iolE |
|
Gene: RER_20170: Inosose dehydratase (EC 4.2.1.44) |
Gene: ROP_10700: Inosose dehydratase (EC 4.2.1.44) |
Gene: RHA1_ro01354: Inosose dehydratase (EC 4.2.1.44) |
Inosose dehydratase (EC 4.2.1.44) |
| iolG |
|
Gene: RER_20160: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Gene: ROP_10710: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Gene: RHA1_ro01355: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
| iolH |
|
Gene: RER_20150: putative sugar-phosphate epimerase/isomerase IolH |
Gene: ROP_10720: putative sugar-phosphate epimerase/isomerase IolH |
Gene: RHA1_ro01356: putative sugar-phosphate epimerase/isomerase IolH |
putative sugar-phosphate epimerase/isomerase IolH |
| iolA |
|
Gene: RER_20140: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: ROP_10730: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: RHA1_ro01357: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |