Regulog PhnF - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Phosphonate utilization; 2-aminoethylphosphonate utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By TF family - GntR/Others
- By pathway - Phosphonate utilization
- By pathway - 2-aminoethylphosphonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | 7 | 3 |
| Rhodococcus erythropolis PR4 | 7 | 2 |
| Rhodococcus opacus B4 | 5 | 2 |
| Rhodococcus sp. RHA1 | 5 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| COG0665 |
*
Nocardia farcinica IFM 10152 Site: position = -78 score = 5.99198 sequence = ACTGGTCTATACCAAT Site: position = -31 score = 5.37986 sequence = ATAGGTCTAGACCATT Gene: nfa35260: Putative FAD dependent oxidoreductase |
*
Rhodococcus erythropolis PR4 Site: position = -78 score = 5.38123 sequence = TTCGGTCTATACCAAT Site: position = -31 score = 6.05071 sequence = ATTGGTCTAGACCAAA Gene: RER_25640: Putative FAD dependent oxidoreductase |
Gene: ROP_34060: Putative FAD dependent oxidoreductase |
Gene: RHA1_ro03606: Putative FAD dependent oxidoreductase |
Putative FAD dependent oxidoreductase |
| phnX |
*
Nocardia farcinica IFM 10152 Site: position = -98 score = 5.7619 sequence = GATGGTCTATACCAAT Site: position = -145 score = 5.69192 sequence = TTTGGTCTATACCAAG Gene: nfa35310: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
Gene: RER_25630: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
2
Rhodococcus opacus B4 Gene: ROP_33550: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) Gene: ROP_34050: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
2
Rhodococcus sp. RHA1 Gene: RHA1_ro03586: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) Gene: RHA1_ro03605: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
| phnS |
|
Gene: RER_25620: Probable 2-aminoethylphosphonate ABC transporter, periplasmic protein |
*
Rhodococcus opacus B4 Site: position = -107 score = 5.99198 sequence = AATGGTCTATACCAAT Site: position = -60 score = 5.69055 sequence = ACTGGTCTAGACCAAA Gene: ROP_66360: Probable 2-aminoethylphosphonate ABC transporter, periplasmic protein |
*
Rhodococcus sp. RHA1 Site: position = -108 score = 5.99198 sequence = AATGGTCTATACCAAT Site: position = -61 score = 5.69055 sequence = ACTGGTCTAGACCAAA Gene: RHA1_ro06602: Probable 2-aminoethylphosphonate ABC transporter, periplasmic protein |
Probable 2-aminoethylphosphonate ABC transporter, periplasmic protein |
| phnT |
|
Gene: RER_25610: Probable 2-aminoethylphosphonate ABC transporter, ATP-binding proteinin |
Gene: ROP_66350: Probable 2-aminoethylphosphonate ABC transporter, ATP-binding proteinin |
Gene: RHA1_ro06601: Probable 2-aminoethylphosphonate ABC transporter, ATP-binding proteinin |
Probable 2-aminoethylphosphonate ABC transporter, ATP-binding proteinin |
| phnU |
|
Gene: RER_25600: Probable 2-aminoethylphosphonate ABC transporter, permease protein 1 |
Gene: ROP_66340: Probable 2-aminoethylphosphonate ABC transporter, permease protein 1 |
Gene: RHA1_ro06600: Probable 2-aminoethylphosphonate ABC transporter, permease protein 1 |
Probable 2-aminoethylphosphonate ABC transporter, permease protein 1 |
| phnV |
|
Gene: RER_25590: Probable 2-aminoethylphosphonate ABC transporter, permease protein 2 |
Gene: ROP_66330: Probable 2-aminoethylphosphonate ABC transporter, permease protein 2 |
Gene: RHA1_ro06599: Probable 2-aminoethylphosphonate ABC transporter, permease protein 2 |
Probable 2-aminoethylphosphonate ABC transporter, permease protein 2 |
| phnD |
Gene: nfa35300: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
|
|
|
Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) |
| phnC |
Gene: nfa35290: Phosphonate ABC transporter ATP-binding protein |
|
|
|
Phosphonate ABC transporter ATP-binding protein |
| phnE |
Gene: nfa35280: Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
|
|
|
Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) |
| COG1063 |
Gene: nfa35270: Phosphonate catabolism associated alcohol dehydrogenase |
|
|
|
Phosphonate catabolism associated alcohol dehydrogenase |
| CRON 2. | |||||
| phnF |
*
Nocardia farcinica IFM 10152 Site: position = -71 score = 5.7619 sequence = ATTGGTATAGACCATC Site: position = -24 score = 5.69192 sequence = CTTGGTATAGACCAAA Gene: nfa35320: Transcriptional regulator for phosphonate utilization, GntR family |
*
Rhodococcus erythropolis PR4 Site: position = -34 score = 5.38123 sequence = ATTGGTATAGACCGAA Site: position = -81 score = 6.05071 sequence = TTTGGTCTAGACCAAT Gene: RER_25650: Transcriptional regulator for phosphonate utilization, GntR family |
*
Rhodococcus opacus B4 Site: position = -92 score = 5.99198 sequence = ATTGGTATAGACCATT Site: position = -139 score = 5.69055 sequence = TTTGGTCTAGACCAGT Gene: ROP_66370: Transcriptional regulator for phosphonate utilization, GntR family |
*
Rhodococcus sp. RHA1 Site: position = 7 score = 5.99198 sequence = ATTGGTATAGACCATT Site: position = -40 score = 5.69055 sequence = TTTGGTCTAGACCAGT Gene: RHA1_ro06603: Transcriptional regulator for phosphonate utilization, GntR family |
Transcriptional regulator for phosphonate utilization, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |