Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SMb20014 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Sugar utilization
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon) 5 1
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1 6 1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234 6 1
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021 6 1
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SMc20018
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -73
score = 6.1672
sequence = ATATGAAACCGGTTACATTT

Site:
position = -51
score = 5.97693
sequence = CGATGTAAACGGTTTCATCG

Gene: Atu4369: Sugar ABC transporter, substrate-binding protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
*
Mesorhizobium sp. BNC1

Site:
position = -37
score = 6.0896
sequence = AATTGAAATCGATTTCATCG

Gene: Meso_0266: Sugar ABC transporter, substrate-binding protein
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
*
Rhizobium sp. NGR234

Site:
position = -59
score = 6.0968
sequence = CATTGAAATCGATTACATTT

Gene: NGR_b02560: Sugar ABC transporter, substrate-binding protein
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -57
score = 5.96108
sequence = GATTGAAATCGATTACATTT

Gene: SMb20018: Sugar ABC transporter, substrate-binding protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, substrate-binding protein
SMc20017
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu4370: Sugar ABC transporter, ATP-binding protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_0265: Sugar ABC transporter, ATP-binding protein
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_b02570: Sugar ABC transporter, ATP-binding protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20017: Sugar ABC transporter, ATP-binding protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, ATP-binding protein
SMb20016
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu4371: Sugar ABC transporter, inner membrane protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_0264: Sugar ABC transporter, inner membrane protein
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_b02580: Sugar ABC transporter, inner membrane protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20016: Sugar ABC transporter, inner membrane protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, inner membrane protein
SMb20015
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu4372: Sugar ABC transporter, inner membrane protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_0263: Sugar ABC transporter, inner membrane protein
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_b02590: Sugar ABC transporter, inner membrane protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20015: Sugar ABC transporter, inner membrane protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, inner membrane protein
SMb20014
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu4373: Transcriptional regulator, LacI family
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_0262: Transcriptional regulator, LacI family
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_b02600: Transcriptional regulator, LacI family
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20014: Transcriptional regulator, LacI family
 
Xanthobacter autotrophicus Py2
Transcriptional regulator, LacI family
SMb0013
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_0261: Dehydrogenase, putative
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_b02610: Dehydrogenase, putative
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20013: Dehydrogenase, putative
 
Xanthobacter autotrophicus Py2
Dehydrogenase, putative
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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