Regulog RafR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Raffinose utilization
Effector:	Raffinose
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - LacI
By effector - Raffinose
By pathway - Raffinose utilization

Statistics of regulated genes
Genome	Genes	Operons
Citrobacter koseri ATCC BAA-895
Edwardsiella tarda EIB202
Enterobacter sp. 638	2	1
Erwinia amylovora ATCC 49946
Erwinia carotovora subsp. atroseptica SCRI1043	2	1
Escherichia coli str. K-12 substr. MG1655
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	2	1
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2
Serratia proteamaculans 568
Yersinia pestis KIM	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
rafR	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638 Gene: Ent638_4078: Transcriptional regulator for raffinose and alpha-galactoside utilization, LacI family	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0755: Transcriptional regulator for raffinose and alpha-galactoside utilization, LacI family	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04202: Transcriptional regulator for raffinose and alpha-galactoside utilization, LacI family	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	* Yersinia pestis KIM Site: position = -214 score = 6.71996 sequence = GATCCGAAACGTTTCGGATT Site: position = -193 score = 6.2754 sequence = AAATCTAAACGTTTCGGATG Gene: y2579: Transcriptional regulator for raffinose and alpha-galactoside utilization, LacI family	Transcriptional regulator for raffinose and alpha-galactoside utilization, LacI family

CRON 2.
rafA	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	* Enterobacter sp. 638 Site: position = -54 score = 6.41527 sequence = TATCCGAAACGTTTCGGATC Site: position = -75 score = 6.08979 sequence = AATCCGAAACGTTTGGGTTG Gene: Ent638_4077: Alpha-galactosidase (EC 3.2.1.22)	Erwinia amylovora ATCC 49946	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -90 score = 4.9691 sequence = TTTCTTAAACGTTTAAGTTG Site: position = -69 score = 4.88333 sequence = TCACTTAAACGTTTAAGTTT Gene: ECA0754: Alpha-galactosidase (EC 3.2.1.22)	Escherichia coli str. K-12 substr. MG1655	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -54 score = 6.63607 sequence = CATCCGAAACGTTTCGGATC Site: position = -75 score = 6.10104 sequence = GATCCGAAACGTTTTGGTTG Gene: KPN_04203: Alpha-galactosidase (EC 3.2.1.22)	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM Gene: y2582: Alpha-galactosidase (EC 3.2.1.22)	Alpha-galactosidase (EC 3.2.1.22)
rafY	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638 Gene: Ent638_4076: Raffinose permease	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0753: Raffinose permease	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04204: Raffinose permease	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM Gene: y2581: Raffinose permease	Raffinose permease

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RafR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --