Regulog ScrR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Sucrose utilization |
| Effector: | Sucrose |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - LacI
- By effector - Sucrose
- By pathway - Sucrose utilization
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 3 | 2 |
| Burkholderia glumae BGR1 | ||
| Burkholderia mallei ATCC 23344 | 3 | 2 |
| Burkholderia phymatum STM815 | 4 | 2 |
| Burkholderia pseudomallei K96243 | 3 | 2 |
| Burkholderia sp. 383 | ||
| Burkholderia vietnamiensis G4 | 3 | 2 |
| Burkholderia xenovorans LB400 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| sacB |
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Burkholderia cepacia AMMD Site: position = -94 score = 6.28891 sequence = CGTCCAAACCGGTTTGAAAT Site: position = -72 score = 6.32094 sequence = CATCCGAACCGGTTTGGACA Gene: Bamb_3698: Levansucrase (EC 2.4.1.10) |
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Burkholderia mallei ATCC 23344 Site: position = -92 score = 6.08894 sequence = CGCCCAAACCGGTTTGAATT Site: position = -70 score = 6.77066 sequence = CATCCAAACCGGTTTGGATA Gene: BMAA0466: Levansucrase (EC 2.4.1.10) |
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Burkholderia phymatum STM815 Site: position = -73 score = 5.75305 sequence = CTTCAAAACCGGTTTGGCCT Site: position = -51 score = 5.98118 sequence = GATCCAAACCGATTTGGAAA Gene: Bphy_6047: Levansucrase (EC 2.4.1.10) |
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Burkholderia pseudomallei K96243 Site: position = -92 score = 6.08894 sequence = CGCCCAAACCGGTTTGAATT Site: position = -70 score = 6.77066 sequence = CATCCAAACCGGTTTGGATA Gene: BPSS0543: Levansucrase (EC 2.4.1.10) |
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Burkholderia vietnamiensis G4 Site: position = -95 score = 5.84341 sequence = CGACCAAACCGGTTTGAAAT Site: position = -73 score = 6.69531 sequence = TATCCAAACCGGTTTGGACA Gene: Bcep1808_4836: Levansucrase (EC 2.4.1.10) |
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Levansucrase (EC 2.4.1.10) |
| Bamb_3698 |
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Gene: Bphy_6048: Putative transcriptional regulator, GntR family |
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Putative transcriptional regulator, GntR family |
| scrB |
Gene: Bamb_3697: Sucrose hydrolase (EC 3.2.1.26) |
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Gene: BMAA0465: Sucrose hydrolase (EC 3.2.1.26) |
Gene: Bphy_6049: Sucrose hydrolase (EC 3.2.1.26) |
Gene: BPSS0542: Sucrose hydrolase (EC 3.2.1.26) |
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Gene: Bcep1808_4835: Sucrose hydrolase (EC 3.2.1.26) |
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Sucrose hydrolase (EC 3.2.1.26) |
| CRON 2. | |||||||||
| scrR |
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Burkholderia cepacia AMMD Site: position = -117 score = 6.32094 sequence = TGTCCAAACCGGTTCGGATG Site: position = -95 score = 6.28891 sequence = ATTTCAAACCGGTTTGGACG Gene: Bamb_3699: Sucrose utilization transcriptional regulator ScrR, LacI family |
|
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Burkholderia mallei ATCC 23344 Site: position = -144 score = 6.77066 sequence = TATCCAAACCGGTTTGGATG Site: position = -122 score = 6.08894 sequence = AATTCAAACCGGTTTGGGCG Gene: BMAA0467: Sucrose utilization transcriptional regulator ScrR, LacI family |
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Burkholderia phymatum STM815 Site: position = -111 score = 5.75305 sequence = AGGCCAAACCGGTTTTGAAG Site: position = -133 score = 5.98118 sequence = TTTCCAAATCGGTTTGGATC Gene: Bphy_6046: Sucrose utilization transcriptional regulator ScrR, LacI family |
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Burkholderia pseudomallei K96243 Site: position = -138 score = 6.77066 sequence = TATCCAAACCGGTTTGGATG Site: position = -116 score = 6.08894 sequence = AATTCAAACCGGTTTGGGCG Gene: BPSS0544: Sucrose utilization transcriptional regulator ScrR, LacI family |
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Burkholderia vietnamiensis G4 Site: position = -129 score = 6.69531 sequence = TGTCCAAACCGGTTTGGATA Site: position = -107 score = 5.84341 sequence = ATTTCAAACCGGTTTGGTCG Gene: Bcep1808_4837: Sucrose utilization transcriptional regulator ScrR, LacI family |
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Sucrose utilization transcriptional regulator ScrR, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |