Regulog RbsR - Clostridia-1

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Ribose utilization
Effector:	Ribose
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By TF family - LacI
By effector - Ribose
By pathway - Ribose utilization

Statistics of regulated genes
Genome	Genes	Operons
Clostridium acetobutylicum ATCC 824
Clostridium beijerincki NCIMB 8052
Clostridium botulinum A str. ATCC 3502
Clostridium butyricum 5521	7	1
Clostridium kluyveri DSM 555
Clostridium novyi NT	6	1
Clostridium perfringens ATCC 13124	4	1
Clostridium tetani E88	6	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
rbsD	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	* Clostridium butyricum 5521 Site: position = -120 score = 4.5724 sequence = TAATAGAAGCAGTTAAATTT Gene: CBY_2443: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Clostridium kluyveri DSM 555	Clostridium novyi NT Gene: NT01CX_0165: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Clostridium perfringens ATCC 13124 Gene: CPF_1883: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Clostridium tetani E88 Gene: CTC02351: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
rbsA	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_2442: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Clostridium kluyveri DSM 555	Clostridium novyi NT Gene: NT01CX_0164: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Clostridium perfringens ATCC 13124 Gene: CPF_1882: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Clostridium tetani E88 Gene: CTC02350: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
rbsC	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_2441: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Clostridium kluyveri DSM 555	Clostridium novyi NT Gene: NT01CX_0163: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Clostridium perfringens ATCC 13124 Gene: CPF_1881: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Clostridium tetani E88 Gene: CTC02349: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
rbsB	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_2440: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Clostridium kluyveri DSM 555	Clostridium novyi NT Gene: NT01CX_0162: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Clostridium perfringens ATCC 13124	Clostridium tetani E88 Gene: CTC02347: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
tal	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_2439: transaldolase	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	transaldolase
tkt	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_2438: transketolase	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	transketolase
rbsR	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_2437: Ribose operon transcriptional regulator, LacI family	Clostridium kluyveri DSM 555	Clostridium novyi NT Gene: NT01CX_0161: Ribose operon transcriptional regulator, LacI family	Clostridium perfringens ATCC 13124 Gene: CPF_1879: Ribose operon transcriptional regulator, LacI family	Clostridium tetani E88 Gene: CTC02346: Ribose operon transcriptional regulator, LacI family	Ribose operon transcriptional regulator, LacI family
rbsK	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	* Clostridium novyi NT Site: position = -65 score = 6.50822 sequence = TAATTTAACCGGTTAAATTA Gene: NT01CX_0166: Ribokinase (EC 2.7.1.15)	* Clostridium perfringens ATCC 13124 Site: position = -45 score = 4.91967 sequence = CTAGTTAATCGGTTCACTGA Site: position = -32 score = 6.50822 sequence = TCACTGAATCGGTTAACTAG Gene: CPF_1884: Ribokinase (EC 2.7.1.15)	* Clostridium tetani E88 Site: position = -37 score = 6.76527 sequence = TTAGTGAACCGGTTAAGTAA Gene: CTC02352: Ribokinase (EC 2.7.1.15)	Ribokinase (EC 2.7.1.15)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR - Clostridia-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --