Regulog KojR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Kojibiose utilization
Effector:	Kojibiose
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - LacI
By effector - Kojibiose
By pathway - Kojibiose utilization

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1	6	2
Bacillus amyloliquefaciens FZB42
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125	5	2
Bacillus licheniformis DSM 13
Bacillus pumilus SAFR-032
Bacillus subtilis subsp. subtilis str. 168
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
kojP	* Anoxybacillus flavithermus WK1 Site: position = -13 score = 6.78028 sequence = AATCCGAAACGTTTTGGGAA Gene: Aflv_2025: Kojibiose phosphorylase (EC 2.4.1.230)	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Kojibiose phosphorylase (EC 2.4.1.230)
pgmB	Anoxybacillus flavithermus WK1 Gene: Aflv_2024: Beta-phosphoglucomutase (EC 5.4.2.6)	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi00665: Beta-phosphoglucomutase (EC 5.4.2.6)	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU34550: Beta-phosphoglucomutase (EC 5.4.2.6)	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Beta-phosphoglucomutase (EC 5.4.2.6)
kojE	Anoxybacillus flavithermus WK1 Gene: Aflv_2023: Kojibiose ABC transporter, substrate-binding protein	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH3690: Kojibiose ABC transporter, substrate-binding protein	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Kojibiose ABC transporter, substrate-binding protein
kojF	Anoxybacillus flavithermus WK1 Gene: Aflv_2022: Kojibiose ABC transporter, permease protein 1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH3689: Kojibiose ABC transporter, permease protein 1	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Kojibiose ABC transporter, permease protein 1
kojG	Anoxybacillus flavithermus WK1 Gene: Aflv_2021: Kojibiose ABC transporter, permease protein 2	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH3688: Kojibiose ABC transporter, permease protein 2	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Kojibiose ABC transporter, permease protein 2
gdb1	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	* Bacillus halodurans C-125 Site: position = -153 score = 6.96966 sequence = AAACCGAAACGTTTTGGATT Site: position = -55 score = 5.51561 sequence = GATCCAAAACGTTTCGGATG Gene: BH3691: Glycogen debranching enzyme	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Glycogen debranching enzyme

CRON 2.
kojR	* Anoxybacillus flavithermus WK1 Site: position = -13 score = 7.20163 sequence = AATCCGAAACGTTTTGGAGG Gene: Aflv_2026: Kojibiose transcriptional regulator KojR, LacI family	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	* Bacillus halodurans C-125 Site: position = -26 score = 7.01225 sequence = CAACCGAAACGTTTTGGAGG Gene: BH3692: Kojibiose transcriptional regulator KojR, LacI family	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Kojibiose transcriptional regulator KojR, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog KojR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --