Regulog CueR - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | activator (repressor) |
| Biological process: | Copper resistance |
| Effector: | Copper ion, (Cu+) |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - CueR
- By TF family - MerR
- By effector - Copper ion, (Cu+)
- By pathway - Copper resistance
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | 3 | 2 |
| Ralstonia pickettii 12J | 13 | 5 |
| Ralstonia metallidurans CH34 | 11 | 4 |
| Ralstonia eutropha JMP134 | 3 | 2 |
| Ralstonia eutropha H16 | 4 | 3 |
| Cupriavidus taiwanensis | 3 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| copZ |
*
Ralstonia solanacearum GMI1000 Site: position = -69 score = 4.94927 sequence = CGTTTCCCATGGTGGGAAGGT Gene: RS02624: Copper chaperone |
*
Ralstonia pickettii 12J Site: position = -66 score = 5.12843 sequence = CACTTCCCACGATGGGAAGGT Gene: Rpic_3544: Copper chaperone |
Gene: Rmet_3525: Copper chaperone |
*
Ralstonia eutropha JMP134 Site: position = -82 score = 5.48199 sequence = CGCTTCCCACCATGGGAAGGT Gene: Reut_A3377: Copper chaperone |
*
Ralstonia eutropha H16 Site: position = -81 score = 5.48199 sequence = CGCTTCCCACCATGGGAAGGT Gene: H16_A3669: Copper chaperone |
*
Cupriavidus taiwanensis Site: position = -80 score = 5.32726 sequence = CGCTTCCCATGGTGGCAAGGT Gene: RALTA_A3125: Copper chaperone |
Copper chaperone |
| CRON 2. | |||||||
| copA |
*
Ralstonia solanacearum GMI1000 Site: position = -61 score = 5.33146 sequence = ACCTTCCTAATATGGGAAGGT Gene: RS02623: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Ralstonia pickettii 12J Site: position = -100 score = 5.12843 sequence = ACCTTCCCATCGTGGGAAGTG Gene: Rpic_3543: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Ralstonia metallidurans CH34 Site: position = -67 score = 5.90649 sequence = ACCTTCCAATGGTGGTAAGGT Gene: Rmet_3524: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Ralstonia eutropha JMP134 Site: position = -59 score = 5.64498 sequence = ACCTTCCTATGATGGTAAGGT Gene: Reut_A3376: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Ralstonia eutropha H16 Site: position = -61 score = 5.99144 sequence = ACCTTCCAATGATGGTAAGGT Gene: H16_A3668: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Cupriavidus taiwanensis Site: position = -60 score = 5.99144 sequence = ACCTTCCAATGATGGTAAGGT Gene: RALTA_A3123: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Copper-translocating P-type ATPase (EC 3.6.3.4) |
| cueR |
Gene: RS02622: Copper-responsive transcriptional regulator, MerR family |
Gene: Rpic_3542: Copper-responsive transcriptional regulator, MerR family |
Gene: Rmet_3523: Copper-responsive transcriptional regulator, MerR family |
Gene: Reut_A3375: Copper-responsive transcriptional regulator, MerR family |
Gene: H16_A3667: Copper-responsive transcriptional regulator, MerR family |
Gene: RALTA_A3122: Copper-responsive transcriptional regulator, MerR family |
Copper-responsive transcriptional regulator, MerR family |
| CRON 3. | |||||||
| copA2 |
|
*2
Ralstonia pickettii 12J Gene: Rpic_1804: Copper-translocating P-type ATPase (EC 3.6.3.4) Site: position = -156 score = 5.34053 sequence = ACCTTCCCTCCGTGGAAAGGT Gene: Rpic_4609: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*2
Ralstonia metallidurans CH34 Site: position = -349 score = 5.75672 sequence = ACCTTCCCATGGCGGGAAGGA Gene: pMOL30_143: Copper-translocating P-type ATPase (EC 3.6.3.4) Site: position = -349 score = 5.75672 sequence = ACCTTCCCATGGCGGGAAGGA Gene: Rmet_6119: Copper-translocating P-type ATPase (EC 3.6.3.4) |
|
*
Ralstonia eutropha H16 Site: position = -358 score = 5.38399 sequence = ACCTTCCAACGATGGGAACCT Gene: H16_A2173: Copper-translocating P-type ATPase (EC 3.6.3.4) |
|
Copper-translocating P-type ATPase (EC 3.6.3.4) |
| copG |
|
|
2
Ralstonia metallidurans CH34 Gene: pMOL30_144: CopG protein Gene: Rmet_6118: CopG protein |
|
|
|
CopG protein |
| cueR2 |
|
*
Ralstonia pickettii 12J Site: position = -125 score = 4.89448 sequence = ACCTTCCCACGTGGGCAGGCT Gene: Rpic_1805: Copper-responsive transcriptional regulator, MerR family |
|
|
|
|
Copper-responsive transcriptional regulator, MerR family |
| CRON 4. | |||||||
| Rpic_1651 |
|
*
Ralstonia pickettii 12J Site: position = -116 score = 5.65875 sequence = ACGTTGCCATTGTGGGAAGGT Gene: Rpic_1651: hypothetical protein |
|
|
|
|
hypothetical protein |
| Rpic_1650 |
|
Gene: Rpic_1650: hypothetical protein |
|
|
|
|
hypothetical protein |
| cusD |
Gene: RS05408: Heavy metal efflux RND transmembrane protein |
Gene: Rpic_1649: Heavy metal efflux RND transmembrane protein |
*2
Ralstonia metallidurans CH34 Site: position = -110 score = 4.5961 sequence = ACGTTCCTGCCGTGGGAACGT Gene: Rmet_5030: Heavy metal efflux RND transmembrane protein Gene: Rmet_6133: Heavy metal efflux RND transmembrane protein |
|
Gene: H16_A2184: Heavy metal efflux RND transmembrane protein |
|
Heavy metal efflux RND transmembrane protein |
| cusC |
Gene: RS05407: Heavy metal efflux RND outer membrane protein, CzcC family |
Gene: Rpic_1648: Heavy metal efflux RND outer membrane protein, CzcC family |
3
Ralstonia metallidurans CH34 Gene: Rmet_5031: Heavy metal efflux RND outer membrane protein, CzcC family Gene: pMOL30_135: Heavy metal efflux RND outer membrane protein, CzcC family Gene: Rmet_6134: Heavy metal efflux RND outer membrane protein, CzcC family |
|
Gene: H16_A2185: Heavy metal efflux RND outer membrane protein, CzcC family |
|
Heavy metal efflux RND outer membrane protein, CzcC family |
| cusB |
Gene: RS05406: Heavy metal efflux RND transporter, membrane fusion protein, CzcB family |
Gene: Rpic_1647: Heavy metal efflux RND transporter, membrane fusion protein, CzcB family |
3
Ralstonia metallidurans CH34 Gene: pMOL30_134: Heavy metal efflux RND transporter, membrane fusion protein, CzcB family Gene: Rmet_6135: Heavy metal efflux RND transporter, membrane fusion protein, CzcB family Gene: Rmet_5032: Heavy metal efflux RND transporter, membrane fusion protein, CzcB family |
|
Gene: H16_A2186: Heavy metal efflux RND transporter, membrane fusion protein, CzcB family |
|
Heavy metal efflux RND transporter, membrane fusion protein, CzcB family |
| cusA |
Gene: RS05405: Heavy metal efflux RND transmembrane protein, CzcA family |
Gene: Rpic_1646: Heavy metal efflux RND transmembrane protein, CzcA family |
3
Ralstonia metallidurans CH34 Gene: pMOL30_133: Heavy metal efflux RND transmembrane protein, CzcA family Gene: Rmet_6136: Heavy metal efflux RND transmembrane protein, CzcA family Gene: Rmet_5033: Heavy metal efflux RND transmembrane protein, CzcA family |
|
Gene: H16_A2187: Heavy metal efflux RND transmembrane protein, CzcA family |
|
Heavy metal efflux RND transmembrane protein, CzcA family |
| cusF |
Gene: RS05404: Heavy metal efflux RND periplasmic protein |
Gene: Rpic_1645: Heavy metal efflux RND periplasmic protein |
Gene: Rmet_5034: Heavy metal efflux RND periplasmic protein |
|
Gene: H16_A2188: Heavy metal efflux RND periplasmic protein |
|
Heavy metal efflux RND periplasmic protein |
| Rmet_6706 |
|
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Gene: Rmet_6706: hypothetical protein |
|
|
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |