Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Oceanospirillales/Alteromonadales

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria/Gamma
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hahella chejuensis KCTC 2396 8 2
Marinobacter aqueolei 4 2
Marinobacter sp. ELB17 5 2
Oceanobacter sp. RED65 8 2
Oceanospirillum sp. MED92 2 1
Marinomonas sp. MWYL1 8 2
Saccharophagus degradans 2-40 9 3
Teredinibacter turnerae T7901 9 3
Cellvibrio japonicus Ueda107 5 2
Chromohalobacter salexigens DSM 3043 4 2
Reinekea sp. MED297 8 2
Alcanivorax borkumensis SK2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiB
*
Hahella chejuensis KCTC 2396

Site:
position = -191
score = 62.83
sequence = GGCAGTCTCATCGGG...

Gene: HCH_01612: Thiamin ABC transporter, substrate-binding component
*
Marinobacter aqueolei

Site:
position = -141
score = 69.65
sequence = ACTCAACTCAACGGG...

Gene: Maqu_1200: Thiamin ABC transporter, substrate-binding component
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
*
Marinomonas sp. MWYL1

Site:
position = -200
score = 72.8
sequence = TCATTATCTCATGGG...

Gene: Mmwyl1_3472: Thiamin ABC transporter, substrate-binding component
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
*
Reinekea sp. MED297

Site:
position = -128
score = 66.29
sequence = CGTTCTTGCCGGGGT...

Gene: MED297_13137: Thiamin ABC transporter, substrate-binding component
 
Alcanivorax borkumensis SK2
Thiamin ABC transporter, substrate-binding component
thiP
 
Hahella chejuensis KCTC 2396

Gene: HCH_01611: Thiamin ABC transporter, permease component
 
Marinobacter aqueolei

Gene: Maqu_1199: Thiamin ABC transporter, permease component
*
Marinobacter sp. ELB17

Site:
position = -371
score = 61.11
sequence = GCCTTTCTCAACGGG...

Gene: MELB17_12481: Thiamin ABC transporter, permease component
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_3471: Thiamin ABC transporter, permease component
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297

Gene: MED297_13142: Thiamin ABC transporter, permease component
 
Alcanivorax borkumensis SK2
Thiamin ABC transporter, permease component
thiQ
 
Hahella chejuensis KCTC 2396

Gene: HCH_01610: Thiamin ABC transporter, ATPase component
 
Marinobacter aqueolei

Gene: Maqu_1198: Thiamin ABC transporter, ATPase component
 
Marinobacter sp. ELB17

Gene: MELB17_12476: Thiamin ABC transporter, ATPase component
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_3470: Thiamin ABC transporter, ATPase component
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297

Gene: MED297_13147: Thiamin ABC transporter, ATPase component
 
Alcanivorax borkumensis SK2
Thiamin ABC transporter, ATPase component
 
CRON 2.
omp_thi
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
*
Oceanobacter sp. RED65

Site:
position = -185
score = 72.82
sequence = AATTATCCAGGGGGA...

Gene: RED65_08869: Predicted thiamin-specific outer membrane transporter, TonB-dependent
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
*
Saccharophagus degradans 2-40

Site:
position = -182
score = 67.23
sequence = GCGCTCCTTAGGGGA...

Gene: Sde_3405: Predicted thiamin-specific outer membrane transporter, TonB-dependent
*
Teredinibacter turnerae T7901

Site:
position = -176
score = 72.0
sequence = GCTGTCCTTAGGGGT...

Gene: TERTU_1246: Predicted thiamin-specific outer membrane transporter, TonB-dependent
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Predicted thiamin-specific outer membrane transporter, TonB-dependent
HCH_01843
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65

Gene: RED65_08874: hypothetical protein
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40

Gene: Sde_3406: hypothetical protein
 
Teredinibacter turnerae T7901

Gene: TERTU_1247: hypothetical protein
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
hypothetical protein
pnuT
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65

Gene: RED65_08879: Predicted thiamin transporter PnuT
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40

Gene: Sde_3407: Predicted thiamin transporter PnuT
 
Teredinibacter turnerae T7901

Gene: TERTU_1248: Predicted thiamin transporter PnuT
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Predicted thiamin transporter PnuT
thiK
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65

Gene: RED65_08884: Predicted thiamine kinase, aminoglycoside phosphotransferase family
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40

Gene: Sde_3408: Predicted thiamine kinase, aminoglycoside phosphotransferase family
 
Teredinibacter turnerae T7901

Gene: TERTU_1249: Predicted thiamine kinase, aminoglycoside phosphotransferase family
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Predicted thiamine kinase, aminoglycoside phosphotransferase family
 
CRON 3.
thiZ
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
*
Chromohalobacter salexigens DSM 3043

Site:
position = -137
score = 50.21
sequence = TCTCTGGATAGGGGT...

Gene: Csal_1932: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Hydroxymethylpyrimidine ABC transporter, ATPase component
thiX
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1933: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1934: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
CRON 4.
thiC
*
Hahella chejuensis KCTC 2396

Site:
position = -212
score = 79.72
sequence = ACATCTTGTCGGGGT...

Gene: HCH_00137: Thiamin biosynthesis protein ThiC
*
Marinobacter aqueolei

Site:
position = -106
score = 60.31
sequence = GCGTCTTGACGGGGT...

Gene: Maqu_0803: Thiamin biosynthesis protein ThiC
 
Marinobacter sp. ELB17
*
Oceanobacter sp. RED65

Site:
position = -304
score = 64.76
sequence = ACATTAGCTCACGGG...

Gene: RED65_02148: Thiamin biosynthesis protein ThiC
 
Oceanospirillum sp. MED92

Gene: MED92_00795: Thiamin biosynthesis protein ThiC
*
Marinomonas sp. MWYL1

Site:
position = -287
score = 79.78
sequence = GCCCTACTTGTCGGA...

Gene: Mmwyl1_2392: Thiamin biosynthesis protein ThiC
 
Saccharophagus degradans 2-40

Gene: Sde_0369: Thiamin biosynthesis protein ThiC
 
Teredinibacter turnerae T7901

Gene: TERTU_3924: Thiamin biosynthesis protein ThiC
 
Cellvibrio japonicus Ueda107

Gene: CJA_2909: Thiamin biosynthesis protein ThiC
*
Chromohalobacter salexigens DSM 3043

Site:
position = -214
score = 66.95
sequence = CGATAGCTTGACGGG...

Gene: Csal_0959: Thiamin biosynthesis protein ThiC
*
Reinekea sp. MED297

Site:
position = -204
score = 70.12
sequence = ATTCATCTTGTCGGA...

Gene: MED297_07781: Thiamin biosynthesis protein ThiC
 
Alcanivorax borkumensis SK2

Gene: ABO_2499: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
thiO
 
Hahella chejuensis KCTC 2396

Gene: HCH_00138: Glycine oxidase ThiO (EC 1.4.3.19)
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65

Gene: RED65_02143: Glycine oxidase ThiO (EC 1.4.3.19)
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
*
Saccharophagus degradans 2-40

Site:
position = -92
score = 62.63
sequence = GCTCACTTTGTCGGG...

Gene: Sde_1456: Glycine oxidase ThiO (EC 1.4.3.19)
*
Teredinibacter turnerae T7901

Site:
position = -88
score = 52.49
sequence = AATGACTGTCGGGGT...

Gene: TERTU_2621: Glycine oxidase ThiO (EC 1.4.3.19)
*
Cellvibrio japonicus Ueda107

Site:
position = -103
score = 69.69
sequence = CCCTCTTGTCGGGGC...

Gene: CJA_2106: Glycine oxidase ThiO (EC 1.4.3.19)
 
Chromohalobacter salexigens DSM 3043
 2
Reinekea sp. MED297

Gene: MED297_07776: Glycine oxidase ThiO (EC 1.4.3.19)

Gene: MED297_07796: Glycine oxidase ThiO (EC 1.4.3.19)
 
Alcanivorax borkumensis SK2
Glycine oxidase ThiO (EC 1.4.3.19)
thiS
 
Hahella chejuensis KCTC 2396

Gene: HCH_00139: Sulfur carrier protein ThiS
 
Marinobacter aqueolei

Gene: Maqu_3504: Sulfur carrier protein ThiS
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65

Gene: RED65_02138: Sulfur carrier protein ThiS
 
Oceanospirillum sp. MED92

Gene: MED92_06583: Sulfur carrier protein ThiS
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_2390: Sulfur carrier protein ThiS
 
Saccharophagus degradans 2-40

Gene: Sde_1455: Sulfur carrier protein ThiS
 
Teredinibacter turnerae T7901

Gene: TERTU_2622: Sulfur carrier protein ThiS
 
Cellvibrio japonicus Ueda107

Gene: CJA_2107: Sulfur carrier protein ThiS
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_3147: Sulfur carrier protein ThiS
 
Reinekea sp. MED297

Gene: MED297_07771: Sulfur carrier protein ThiS
 
Alcanivorax borkumensis SK2
Sulfur carrier protein ThiS
thiG
 
Hahella chejuensis KCTC 2396

Gene: HCH_00140: Thiazole biosynthesis protein ThiG
 
Marinobacter aqueolei

Gene: Maqu_3503: Thiazole biosynthesis protein ThiG
 
Marinobacter sp. ELB17

Gene: MELB17_01465: Thiazole biosynthesis protein ThiG
 
Oceanobacter sp. RED65

Gene: RED65_02133: Thiazole biosynthesis protein ThiG
 
Oceanospirillum sp. MED92

Gene: MED92_06588: Thiazole biosynthesis protein ThiG
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_2389: Thiazole biosynthesis protein ThiG
 
Saccharophagus degradans 2-40

Gene: Sde_1454: Thiazole biosynthesis protein ThiG
 
Teredinibacter turnerae T7901

Gene: TERTU_2623: Thiazole biosynthesis protein ThiG
 
Cellvibrio japonicus Ueda107

Gene: CJA_2108: Thiazole biosynthesis protein ThiG
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_3146: Thiazole biosynthesis protein ThiG
 
Reinekea sp. MED297

Gene: MED297_07766: Thiazole biosynthesis protein ThiG
 
Alcanivorax borkumensis SK2
Thiazole biosynthesis protein ThiG
thiDE
 
Hahella chejuensis KCTC 2396

Gene: HCH_00141: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_2391: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297

Gene: MED297_07761: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Alcanivorax borkumensis SK2
Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiH
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_2388: 2-iminoacetate synthase (EC 1.3.99.n2)
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
2-iminoacetate synthase (EC 1.3.99.n2)
oarX
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
*
Marinobacter sp. ELB17

Site:
position = -143
score = 59.37
sequence = GGCTCGACACGGGGT...

Gene: MELB17_01455: Thiamin-related 3-oxoacyl-[acyl-carrier protein] reductase OarX
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
Thiamin-related 3-oxoacyl-[acyl-carrier protein] reductase OarX
MELB17_01460
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17

Gene: MELB17_01460: nitrilotriacetate monooxygenase component A
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Marinomonas sp. MWYL1
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
 
Chromohalobacter salexigens DSM 3043
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2
nitrilotriacetate monooxygenase component A
thiD
 
Hahella chejuensis KCTC 2396
 
Marinobacter aqueolei

Gene: Maqu_0688: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Marinobacter sp. ELB17

Gene: MELB17_20341: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Oceanobacter sp. RED65
*
Oceanospirillum sp. MED92

Site:
position = -145
score = 66.67
sequence = CATCTTGGTCGGGGT...

Gene: MED92_00790: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Marinomonas sp. MWYL1
*2
Saccharophagus degradans 2-40

Gene: Sde_0829: Phosphomethylpyrimidine kinase (EC 2.7.4.7)

Site:
position = -207
score = 64.18
sequence = CATTCTTGTCGGGGT...

Gene: Sde_0368: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
*2
Teredinibacter turnerae T7901

Site:
position = -126
score = 69.84
sequence = TTAACACTTGTCGGG...

Gene: TERTU_3925: Phosphomethylpyrimidine kinase (EC 2.7.4.7)

Gene: TERTU_3067: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
*
Cellvibrio japonicus Ueda107

Site:
position = -154
score = 66.82
sequence = CACTTTCTTGTCGGG...

Gene: CJA_2910: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_3302: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Reinekea sp. MED297
 
Alcanivorax borkumensis SK2

Gene: ABO_0356: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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