Regulog TPP - Oceanospirillales/Alteromonadales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Gamma |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | 8 | 2 |
| Marinobacter aqueolei | 4 | 2 |
| Marinobacter sp. ELB17 | 5 | 2 |
| Oceanobacter sp. RED65 | 8 | 2 |
| Oceanospirillum sp. MED92 | 2 | 1 |
| Marinomonas sp. MWYL1 | 8 | 2 |
| Saccharophagus degradans 2-40 | 9 | 3 |
| Teredinibacter turnerae T7901 | 9 | 3 |
| Cellvibrio japonicus Ueda107 | 5 | 2 |
| Chromohalobacter salexigens DSM 3043 | 4 | 2 |
| Reinekea sp. MED297 | 8 | 2 |
| Alcanivorax borkumensis SK2 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| thiB |
*
Hahella chejuensis KCTC 2396 Site: position = -191 score = 62.83 sequence = GGCAGTCTCATCGGG... Gene: HCH_01612: Thiamin ABC transporter, substrate-binding component |
*
Marinobacter aqueolei Site: position = -141 score = 69.65 sequence = ACTCAACTCAACGGG... Gene: Maqu_1200: Thiamin ABC transporter, substrate-binding component |
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*
Marinomonas sp. MWYL1 Site: position = -200 score = 72.8 sequence = TCATTATCTCATGGG... Gene: Mmwyl1_3472: Thiamin ABC transporter, substrate-binding component |
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|
*
Reinekea sp. MED297 Site: position = -128 score = 66.29 sequence = CGTTCTTGCCGGGGT... Gene: MED297_13137: Thiamin ABC transporter, substrate-binding component |
|
Thiamin ABC transporter, substrate-binding component |
| thiP |
Gene: HCH_01611: Thiamin ABC transporter, permease component |
Gene: Maqu_1199: Thiamin ABC transporter, permease component |
*
Marinobacter sp. ELB17 Site: position = -371 score = 61.11 sequence = GCCTTTCTCAACGGG... Gene: MELB17_12481: Thiamin ABC transporter, permease component |
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Gene: Mmwyl1_3471: Thiamin ABC transporter, permease component |
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Gene: MED297_13142: Thiamin ABC transporter, permease component |
|
Thiamin ABC transporter, permease component |
| thiQ |
Gene: HCH_01610: Thiamin ABC transporter, ATPase component |
Gene: Maqu_1198: Thiamin ABC transporter, ATPase component |
Gene: MELB17_12476: Thiamin ABC transporter, ATPase component |
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Gene: Mmwyl1_3470: Thiamin ABC transporter, ATPase component |
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Gene: MED297_13147: Thiamin ABC transporter, ATPase component |
|
Thiamin ABC transporter, ATPase component |
| CRON 2. | |||||||||||||
| omp_thi |
|
|
|
*
Oceanobacter sp. RED65 Site: position = -185 score = 72.82 sequence = AATTATCCAGGGGGA... Gene: RED65_08869: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
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*
Saccharophagus degradans 2-40 Site: position = -182 score = 67.23 sequence = GCGCTCCTTAGGGGA... Gene: Sde_3405: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
*
Teredinibacter turnerae T7901 Site: position = -176 score = 72.0 sequence = GCTGTCCTTAGGGGT... Gene: TERTU_1246: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
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Predicted thiamin-specific outer membrane transporter, TonB-dependent |
| HCH_01843 |
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Gene: RED65_08874: hypothetical protein |
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Gene: Sde_3406: hypothetical protein |
Gene: TERTU_1247: hypothetical protein |
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hypothetical protein |
| pnuT |
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Gene: RED65_08879: Predicted thiamin transporter PnuT |
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Gene: Sde_3407: Predicted thiamin transporter PnuT |
Gene: TERTU_1248: Predicted thiamin transporter PnuT |
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Predicted thiamin transporter PnuT |
| thiK |
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Gene: RED65_08884: Predicted thiamine kinase, aminoglycoside phosphotransferase family |
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Gene: Sde_3408: Predicted thiamine kinase, aminoglycoside phosphotransferase family |
Gene: TERTU_1249: Predicted thiamine kinase, aminoglycoside phosphotransferase family |
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Predicted thiamine kinase, aminoglycoside phosphotransferase family |
| CRON 3. | |||||||||||||
| thiZ |
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*
Chromohalobacter salexigens DSM 3043 Site: position = -137 score = 50.21 sequence = TCTCTGGATAGGGGT... Gene: Csal_1932: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Hydroxymethylpyrimidine ABC transporter, ATPase component |
| thiX |
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Gene: Csal_1933: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Hydroxymethylpyrimidine ABC transporter, transmembrane component |
| thiY |
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Gene: Csal_1934: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
| CRON 4. | |||||||||||||
| thiC |
*
Hahella chejuensis KCTC 2396 Site: position = -212 score = 79.72 sequence = ACATCTTGTCGGGGT... Gene: HCH_00137: Thiamin biosynthesis protein ThiC |
*
Marinobacter aqueolei Site: position = -106 score = 60.31 sequence = GCGTCTTGACGGGGT... Gene: Maqu_0803: Thiamin biosynthesis protein ThiC |
|
*
Oceanobacter sp. RED65 Site: position = -304 score = 64.76 sequence = ACATTAGCTCACGGG... Gene: RED65_02148: Thiamin biosynthesis protein ThiC |
Gene: MED92_00795: Thiamin biosynthesis protein ThiC |
*
Marinomonas sp. MWYL1 Site: position = -287 score = 79.78 sequence = GCCCTACTTGTCGGA... Gene: Mmwyl1_2392: Thiamin biosynthesis protein ThiC |
Gene: Sde_0369: Thiamin biosynthesis protein ThiC |
Gene: TERTU_3924: Thiamin biosynthesis protein ThiC |
Gene: CJA_2909: Thiamin biosynthesis protein ThiC |
*
Chromohalobacter salexigens DSM 3043 Site: position = -214 score = 66.95 sequence = CGATAGCTTGACGGG... Gene: Csal_0959: Thiamin biosynthesis protein ThiC |
*
Reinekea sp. MED297 Site: position = -204 score = 70.12 sequence = ATTCATCTTGTCGGA... Gene: MED297_07781: Thiamin biosynthesis protein ThiC |
Gene: ABO_2499: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| thiO |
Gene: HCH_00138: Glycine oxidase ThiO (EC 1.4.3.19) |
|
|
Gene: RED65_02143: Glycine oxidase ThiO (EC 1.4.3.19) |
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|
*
Saccharophagus degradans 2-40 Site: position = -92 score = 62.63 sequence = GCTCACTTTGTCGGG... Gene: Sde_1456: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Teredinibacter turnerae T7901 Site: position = -88 score = 52.49 sequence = AATGACTGTCGGGGT... Gene: TERTU_2621: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Cellvibrio japonicus Ueda107 Site: position = -103 score = 69.69 sequence = CCCTCTTGTCGGGGC... Gene: CJA_2106: Glycine oxidase ThiO (EC 1.4.3.19) |
|
2
Reinekea sp. MED297 Gene: MED297_07776: Glycine oxidase ThiO (EC 1.4.3.19) Gene: MED297_07796: Glycine oxidase ThiO (EC 1.4.3.19) |
|
Glycine oxidase ThiO (EC 1.4.3.19) |
| thiS |
Gene: HCH_00139: Sulfur carrier protein ThiS |
Gene: Maqu_3504: Sulfur carrier protein ThiS |
|
Gene: RED65_02138: Sulfur carrier protein ThiS |
Gene: MED92_06583: Sulfur carrier protein ThiS |
Gene: Mmwyl1_2390: Sulfur carrier protein ThiS |
Gene: Sde_1455: Sulfur carrier protein ThiS |
Gene: TERTU_2622: Sulfur carrier protein ThiS |
Gene: CJA_2107: Sulfur carrier protein ThiS |
Gene: Csal_3147: Sulfur carrier protein ThiS |
Gene: MED297_07771: Sulfur carrier protein ThiS |
|
Sulfur carrier protein ThiS |
| thiG |
Gene: HCH_00140: Thiazole biosynthesis protein ThiG |
Gene: Maqu_3503: Thiazole biosynthesis protein ThiG |
Gene: MELB17_01465: Thiazole biosynthesis protein ThiG |
Gene: RED65_02133: Thiazole biosynthesis protein ThiG |
Gene: MED92_06588: Thiazole biosynthesis protein ThiG |
Gene: Mmwyl1_2389: Thiazole biosynthesis protein ThiG |
Gene: Sde_1454: Thiazole biosynthesis protein ThiG |
Gene: TERTU_2623: Thiazole biosynthesis protein ThiG |
Gene: CJA_2108: Thiazole biosynthesis protein ThiG |
Gene: Csal_3146: Thiazole biosynthesis protein ThiG |
Gene: MED297_07766: Thiazole biosynthesis protein ThiG |
|
Thiazole biosynthesis protein ThiG |
| thiDE |
Gene: HCH_00141: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
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Gene: Mmwyl1_2391: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
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Gene: MED297_07761: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
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Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiH |
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Gene: Mmwyl1_2388: 2-iminoacetate synthase (EC 1.3.99.n2) |
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2-iminoacetate synthase (EC 1.3.99.n2) |
| oarX |
|
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*
Marinobacter sp. ELB17 Site: position = -143 score = 59.37 sequence = GGCTCGACACGGGGT... Gene: MELB17_01455: Thiamin-related 3-oxoacyl-[acyl-carrier protein] reductase OarX |
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Thiamin-related 3-oxoacyl-[acyl-carrier protein] reductase OarX |
| MELB17_01460 |
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Gene: MELB17_01460: nitrilotriacetate monooxygenase component A |
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nitrilotriacetate monooxygenase component A |
| thiD |
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Gene: Maqu_0688: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: MELB17_20341: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
|
*
Oceanospirillum sp. MED92 Site: position = -145 score = 66.67 sequence = CATCTTGGTCGGGGT... Gene: MED92_00790: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
|
*2
Saccharophagus degradans 2-40 Gene: Sde_0829: Phosphomethylpyrimidine kinase (EC 2.7.4.7) Site: position = -207 score = 64.18 sequence = CATTCTTGTCGGGGT... Gene: Sde_0368: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*2
Teredinibacter turnerae T7901 Site: position = -126 score = 69.84 sequence = TTAACACTTGTCGGG... Gene: TERTU_3925: Phosphomethylpyrimidine kinase (EC 2.7.4.7) Gene: TERTU_3067: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Cellvibrio japonicus Ueda107 Site: position = -154 score = 66.82 sequence = CACTTTCTTGTCGGG... Gene: CJA_2910: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Csal_3302: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
|
Gene: ABO_0356: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |