Regulog TPP - Rhizobiales
Regulator type: | RNA regulatory element |
Name: | TPP |
RFAM: | RF00059 |
Regulation mode: | |
Biological process: | Thiamine biosynthesis |
Effector: | Thiamine pyrophosphate |
Phylum: | Proteobacteria |

Member of regulog collections
- By taxonomy - Rhizobiales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
Genome | Genes | Operons |
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Sinorhizobium meliloti 1021 | 8 | 3 |
Rhizobium sp. NGR234 | 8 | 3 |
Rhizobium leguminosarum bv. viciae 3841 | 8 | 3 |
Rhizobium etli CFN 42 | 8 | 3 |
Agrobacterium tumefaciens str. C58 (Cereon) | 12 | 3 |
Mesorhizobium sp. BNC1 | 9 | 2 |
Mesorhizobium loti MAFF303099 | 13 | 3 |
Brucella melitensis 16M | 11 | 2 |
Bartonella quintana str. Toulouse | ||
Rhodopseudomonas palustris CGA009 | 5 | 1 |
Bradyrhizobium japonicum USDA 110 | 4 | 1 |
Bradyrhizobium sp. BTAi1 | 2 | 1 |
Nitrobacter winogradskyi Nb-255 | 5 | 1 |
Azorhizobium caulinodans ORS 571 | 2 | 2 |
Xanthobacter autotrophicus Py2 | 5 | 2 |
Genes | Function | |||||||||||||||
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CRON 1. | ||||||||||||||||
thiD |
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Sinorhizobium meliloti 1021 Site: position = -232 score = 74.99 sequence = AGCGCATTCCGAGGG... Gene: SMb20962: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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Rhizobium sp. NGR234 Site: position = -162 score = 68.26 sequence = CCTCCATTCCGAGGG... Gene: NGR_b18410: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: pRL110441: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: RHE_PE00335: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Atu3290: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Meso_2566: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: mll5788: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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Brucella melitensis 16M Site: position = -153 score = 77.74 sequence = AAAATTCGTTGGGGT... Gene: BMEI1732: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: BQ04060: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: RPA3971: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: bll5905: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: BBta_5600: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Nwi_1082: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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Azorhizobium caulinodans ORS 571 Site: position = -144 score = 46.84 sequence = CCATCTCGTCGGGGT... Gene: AZC_1826: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Xaut_4453: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
thiO |
Gene: SMb20616: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: NGR_b02920: Glycine oxidase ThiO (EC 1.4.3.19) / thiamine biosynthesis protein ThiS |
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Gene: RHE_PB00081: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: Atu2568: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: Meso_2562: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: mll5793: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: BMEI1733: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: BQ04100: Glycine oxidase ThiO (EC 1.4.3.19) |
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Rhodopseudomonas palustris CGA009 Site: position = -254 score = 60.17 sequence = CCCGTTCCGAGGGGG... Gene: RPA3573: Glycine oxidase ThiO (EC 1.4.3.19) |
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Bradyrhizobium japonicum USDA 110 Site: position = -115 score = 69.97 sequence = ACCGTTCCGAGGGGT... Gene: blr6655: Glycine oxidase ThiO (EC 1.4.3.19) |
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Bradyrhizobium sp. BTAi1 Site: position = -97 score = 68.2 sequence = CGCGTTCCGAGGGGA... Gene: BBta_6222: Glycine oxidase ThiO (EC 1.4.3.19) |
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Nitrobacter winogradskyi Nb-255 Site: position = -122 score = 68.62 sequence = GATGTTCCGAGGGGT... Gene: Nwi_2464: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: AZC_3554: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Xanthobacter autotrophicus Py2 Site: position = -85 score = 48.45 sequence = AACGGCCTGGGGTGC... Gene: Xaut_2223: Glycine oxidase ThiO (EC 1.4.3.19) |
Glycine oxidase ThiO (EC 1.4.3.19) |
thiS |
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Gene: Atu2567: Thiamine biosynthesis protein ThiS |
Gene: Meso_2563: Sulfur carrier protein ThiS |
Gene: msl5792: Thiamine biosynthesis protein ThiS |
Gene: BMEI1734: Thiamine biosynthesis protein ThiS |
Gene: BQ04090: Thiamine biosynthesis protein ThiS |
Gene: RPA3574: Thiamine biosynthesis protein ThiS |
Gene: bsr6656: Thiamine biosynthesis protein ThiS |
Gene: BBta_6223: Thiamine biosynthesis protein ThiS |
Gene: Nwi_2465: Thiamine biosynthesis protein ThiS |
Gene: AZC_3553: Thiamine biosynthesis protein ThiS |
Gene: Xaut_2224: Thiamine biosynthesis protein ThiS |
Thiamine biosynthesis protein ThiS |
thiG |
Gene: SMb20617: Thiazole biosynthesis protein ThiG |
Gene: NGR_b02910: Thiazole biosynthesis protein ThiG |
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Gene: RHE_PB00080: Thiazole biosynthesis protein ThiG |
Gene: Atu2566: Thiazole biosynthesis protein ThiG |
Gene: Meso_2564: Thiazole biosynthesis protein ThiG |
Gene: mll5790: Thiazole biosynthesis protein ThiG |
Gene: BMEI1735: Thiazole biosynthesis protein ThiG |
Gene: BQ04080: Thiazole biosynthesis protein ThiG |
Gene: RPA3575: Thiazole biosynthesis protein ThiG |
Gene: blr6657: Thiazole biosynthesis protein ThiG |
Gene: BBta_6224: Thiazole biosynthesis protein ThiG |
Gene: Nwi_2466: Thiazole biosynthesis protein ThiG |
Gene: AZC_3552: Thiazole biosynthesis protein ThiG |
Gene: Xaut_2225: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
thiE |
Gene: SMb20618: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: NGR_b02900: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: pRL110442: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Rhizobium etli CFN 42 Gene: RHE_PB00079: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: RHE_PE00336: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Atu3289: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Meso_2565: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: mll5789: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: BMEI1736: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: BQ04070: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: RPA3576: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: blr6658: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: BBta_6225: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Nwi_2467: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: AZC_3541: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Xaut_2226: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
thiY1 |
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Gene: Atu3287: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Gene: BMEI1737: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Gene: AZC_2056: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
tenA |
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Gene: BMEI1738: Thiaminase II (EC 3.5.99.2) |
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Gene: bll7388: Thiaminase II (EC 3.5.99.2) |
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Gene: Nwi_0858: Thiaminase II (EC 3.5.99.2) |
Gene: AZC_1878: Thiaminase II (EC 3.5.99.2) |
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Thiaminase II (EC 3.5.99.2) |
thiX1 |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -227 score = 74.34 sequence = GCTCTTCCGAGGGGA... Gene: Atu3286: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Gene: BMEI1739: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Gene: AZC_2057: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Hydroxymethylpyrimidine ABC transporter, transmembrane component |
thiC |
*
Sinorhizobium meliloti 1021 Site: position = -209 score = 67.9 sequence = CCATTCACCAGGGGG... Gene: SMb20615: Thiamin biosynthesis protein ThiC |
*
Rhizobium sp. NGR234 Site: position = -210 score = 73.12 sequence = GTCCATTCACCAGGG... Gene: NGR_b02930: Thiamin biosynthesis protein ThiC |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -187 score = 63.3 sequence = TTGCATTCACCAGGG... Gene: pRL100148: Thiamin biosynthesis protein ThiC |
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Rhizobium etli CFN 42 Site: position = -228 score = 66.53 sequence = GACCATTCACCAGGG... Gene: RHE_PB00082: Thiamin biosynthesis protein ThiC |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -208 score = 72.71 sequence = GGCCATTCACCAGGG... Gene: Atu2569: Thiamin biosynthesis protein ThiC |
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Mesorhizobium sp. BNC1 Site: position = -222 score = 78.89 sequence = ACCATCACCAGGGGG... Gene: Meso_2561: Thiamin biosynthesis protein ThiC |
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Mesorhizobium loti MAFF303099 Site: position = -197 score = 70.85 sequence = ATGCATTCACCAGGG... Gene: mll5795: Thiamin biosynthesis protein ThiC |
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Gene: BQ04110: Thiamin biosynthesis protein ThiC |
Gene: RPA3577: Thiamin biosynthesis protein ThiC |
Gene: blr6659: Thiamin biosynthesis protein ThiC |
Gene: BBta_6226: Thiamin biosynthesis protein ThiC |
Gene: Nwi_2468: Thiamin biosynthesis protein ThiC |
*
Azorhizobium caulinodans ORS 571 Site: position = -245 score = 63.91 sequence = CTTATTCCAAGGGGG... Gene: AZC_2607: Thiamin biosynthesis protein ThiC |
*
Xanthobacter autotrophicus Py2 Site: position = -213 score = 56.21 sequence = AACGTTCCAAGGGGG... Gene: Xaut_3515: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
thiM |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -148 score = 56.24 sequence = CGATGAGAGACAGGG... Gene: pRL110443: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
*
Rhizobium etli CFN 42 Site: position = -165 score = 53.95 sequence = CGATGAGAGACAGGG... Gene: RHE_PE00337: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: Atu3288: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
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Hydroxyethylthiazole kinase (EC 2.7.1.50) |
CRON 2. | ||||||||||||||||
ykoF |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -103 score = 57.82 sequence = GCAAATAACAGGGGA... Gene: RL4399: Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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Mesorhizobium loti MAFF303099 Site: position = 165 score = 53.82 sequence = CGCCCATCCACAGGG... Gene: mll1759: Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
thiX |
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Gene: RL4400: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Rhizobium etli CFN 42 Site: position = -273 score = 58.37 sequence = CGAAATAACAGGGGA... Gene: RHE_CH03864: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Gene: mll1758: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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2
Bradyrhizobium japonicum USDA 110 Gene: bll3314: Hydroxymethylpyrimidine ABC transporter, transmembrane component Gene: bll3315: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Hydroxymethylpyrimidine ABC transporter, transmembrane component |
thiZ |
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Gene: RL4401: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: RHE_CH03865: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Gene: mll1757: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Gene: bll3318: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Gene: AZC_2445: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Hydroxymethylpyrimidine ABC transporter, ATPase component |
thiY |
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Gene: RL4402: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: RHE_CH03866: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Gene: mll1755: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Gene: bll3316: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Gene: AZC_2447: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
CRON 3. | ||||||||||||||||
thiB |
*
Sinorhizobium meliloti 1021 Site: position = -161 score = 65.11 sequence = CTGCTCTAACGGGGT... Gene: SMc03869: Thiamin ABC transporter, substrate-binding component |
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Rhizobium sp. NGR234 Site: position = -162 score = 61.3 sequence = CTGCTCTAACGGGGT... Gene: NGR_c32610: Thiamin ABC transporter, substrate-binding component |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -149 score = 67.44 sequence = TCTTGATCTAACGGG... Gene: Atu2714: Thiamin ABC transporter, substrate-binding component |
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Mesorhizobium sp. BNC1 Site: position = -136 score = 70.4 sequence = TCGCTCTAACGGGGT... Gene: Meso_3259: Thiamin ABC transporter, substrate-binding component |
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Mesorhizobium loti MAFF303099 Site: position = -160 score = 70.18 sequence = AAACGCTCTAACGGG... Gene: mll3867: Thiamin ABC transporter, substrate-binding component |
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Brucella melitensis 16M Site: position = -210 score = 59.36 sequence = AGTCGCTCTAACGGG... Gene: BMEI0285: Thiamin ABC transporter, substrate-binding component |
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Thiamin ABC transporter, substrate-binding component |
thiP |
Gene: SMc03870: Thiamin ABC transporter, transmembrane component |
Gene: NGR_c32620: Thiamin ABC transporter, transmembrane component |
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Gene: Atu2713: Thiamin ABC transporter, transmembrane component |
Gene: Meso_3260: Thiamin ABC transporter, transmembrane component |
Gene: mll3865: Thiamin ABC transporter, transmembrane component |
Gene: BMEI0284: Thiamin ABC transporter, transmembrane component |
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Thiamin ABC transporter, transmembrane component |
thiQ |
Gene: SMc03871: Thiamin ABC transporter, ATPase component |
Gene: NGR_c32630: Thiamin ABC transporter, ATPase component |
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Gene: Atu2712: Thiamin ABC transporter, ATPase component |
Gene: Meso_3261: Thiamin ABC transporter, ATPase component |
Gene: mll3864: Thiamin ABC transporter, ATPase component |
Gene: BMEI0283: Thiamin ABC transporter, ATPase component |
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Thiamin ABC transporter, ATPase component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |