Regulog RutR2 - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | 7 | 2 |
| Pseudomonas entomophila L48 | 5 | 2 |
| Pseudomonas fluorescens Pf-5 | 5 | 2 |
| Pseudomonas mendocina ymp | ||
| Pseudomonas putida KT2440 | 2 | 1 |
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| pydB |
|
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Pseudomonas aeruginosa PAO1 Site: position = -99 score = 6.98437 sequence = TCCTGTCAGCGCTGACAGGA Gene: PA0441: Dihydropyrimidinase (EC 3.5.2.2) |
*
Pseudomonas entomophila L48 Site: position = -100 score = 6.64563 sequence = TCTTGTCAGGCCTGACAGGA Gene: PSEEN3253: Dihydropyrimidinase (EC 3.5.2.2) |
*
Pseudomonas fluorescens Pf-5 Site: position = -94 score = 6.50884 sequence = TCCTGTCACCGATGACAGGA Gene: PFL_2548: Dihydropyrimidinase (EC 3.5.2.2) |
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Dihydropyrimidinase (EC 3.5.2.2) |
| pydX |
|
Gene: PA0440: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
Gene: PSEEN3252: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
Gene: PFL_2547: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
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Gene: PP4037: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
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Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
| pydA |
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Gene: PA0439: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
Gene: PSEEN3251: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
Gene: PFL_2546: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
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Gene: PP4038: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
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Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
| codB |
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Gene: PA0438: Cytosine permease |
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Gene: PFL_4032: Cytosine permease |
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Gene: PP3187: Cytosine permease |
Gene: PST_3569: Cytosine permease |
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Cytosine permease |
| codA |
Gene: Avin_30170: Cytosine deaminase protein |
Gene: PA0437: Cytosine deaminase protein |
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Gene: PFL_4033: Cytosine deaminase protein |
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Gene: PP3189: Cytosine deaminase protein |
Gene: PST_3570: Cytosine deaminase protein |
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Cytosine deaminase protein |
| CRON 2. | |||||||||
| pydP |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -273 score = 5.71037 sequence = TCCTGACCGGGGCGACAGGC Gene: PA0443: Pyrimidine permease in reductive pathway |
*
Pseudomonas entomophila L48 Site: position = -524 score = 6.78076 sequence = TCCTGTCAGGCCTGACAAGA Gene: PSEEN3254: Pyrimidine permease in reductive pathway |
*
Pseudomonas fluorescens Pf-5 Site: position = -547 score = 6.61161 sequence = TCCTGTCATCGGTGACAGGA Gene: PFL_2549: Pyrimidine permease in reductive pathway |
|
*
Pseudomonas putida KT2440 Site: position = -266 score = 6.61161 sequence = TCCTGTCAGTCCTGACAAGA Gene: PP4035: Pyrimidine permease in reductive pathway |
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Pyrimidine permease in reductive pathway |
| pydC |
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Gene: PA0444: Beta-ureidopropionase (EC 3.5.1.6) |
Gene: PSEEN3255: Beta-ureidopropionase (EC 3.5.1.6) |
Gene: PFL_2550: Beta-ureidopropionase (EC 3.5.1.6) |
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Gene: PP4034: Beta-ureidopropionase (EC 3.5.1.6) |
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Beta-ureidopropionase (EC 3.5.1.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |