Regulog TPP - Chloroflexia
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Chloroflexi |
Member of regulog collections
- By taxonomy - Chloroflexi
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Chloroflexus aggregans DSM 9485 | 7 | 2 |
| Chloroflexus sp. Y-400-fl | 11 | 4 |
| Roseiflexus castenholzii DSM 13941 | 10 | 3 |
| Roseiflexus sp. RS-1 | 14 | 4 |
| Herpetosiphon aurantiacus ATCC 23779 | 1 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| thiB |
|
|
|
|
*
Herpetosiphon aurantiacus ATCC 23779 Site: position = -160 score = 78.25 sequence = ACAACCGCTAGGGGA... Gene: Haur_0261: Thiamin ABC transporter, substrate-binding component |
Thiamin ABC transporter, substrate-binding component |
| CRON 2. | ||||||
| COG0011 |
*
Chloroflexus aggregans DSM 9485 Site: position = -184 score = 70.23 sequence = TATGTAGCGAGGGGT... Gene: Cagg_3115: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
*
Chloroflexus sp. Y-400-fl Site: position = -197 score = 67.7 sequence = TACGCGCTGCCAGGG... Gene: Chy400_0456: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
*
Roseiflexus castenholzii DSM 13941 Site: position = -157 score = 58.1 sequence = AGGGGAGCCAGGTGA... Gene: Rcas_0665: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
*
Roseiflexus sp. RS-1 Site: position = -218 score = 59.61 sequence = AGGGGAGCCAGGAGA... Gene: RoseRS_0668: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
|
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
| thiX |
Gene: Cagg_3116: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: Chy400_0455: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: Rcas_0666: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: RoseRS_0669: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
|
Hydroxymethylpyrimidine ABC transporter, transmembrane component |
| thiY |
Gene: Cagg_3117: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: Chy400_0454: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: Rcas_0667: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: RoseRS_0670: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
|
Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
| thiZ |
Gene: Cagg_3118: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: Chy400_0453: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: Rcas_0668: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: RoseRS_0671: Hydroxymethylpyrimidine ABC transporter, ATPase component |
|
Hydroxymethylpyrimidine ABC transporter, ATPase component |
| CRON 3. | ||||||
| thiE |
Gene: Cagg_3166: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Chy400_0400: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -180 score = 71.73 sequence = GGCGCCACTGGGGGA... Gene: Rcas_4121: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
*
Roseiflexus sp. RS-1 Site: position = -183 score = 68.19 sequence = ACGGCGCCACTGGGG... Gene: RoseRS_1927: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Haur_2443: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiM |
*
Chloroflexus aggregans DSM 9485 Site: position = -227 score = 64.76 sequence = ATAGATGCCAGGGGA... Gene: Cagg_3165: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
*
Chloroflexus sp. Y-400-fl Site: position = -228 score = 61.84 sequence = ACTAATAAGCCAGGG... Gene: Chy400_0401: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: Rcas_4122: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: RoseRS_1926: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: Haur_2444: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| thiW |
|
|
Gene: Rcas_4123: Substrate-specific component ThiW of predicted thiazole ECF transporter |
Gene: RoseRS_1925: Substrate-specific component ThiW of predicted thiazole ECF transporter |
Gene: Haur_2442: Substrate-specific component ThiW of predicted thiazole ECF transporter |
Substrate-specific component ThiW of predicted thiazole ECF transporter |
| ecfAA |
|
Gene: Chy400_0858: Substrate-specific component ThiW of predicted thiazole ECF transporter/ ATPase component of general energizing module of ECF transporters / ATPase component of general energizing module of ECF transporters |
Gene: Rcas_4124: ATPase component of general energizing module of ECF transporters / ATPase component of general energizing module of ECF transporters |
2
Roseiflexus sp. RS-1 Gene: RoseRS_1924: ATPase component of general energizing module of ECF transporters Gene: RoseRS_1923: ATPase component of general energizing module of ECF transporters |
Gene: Haur_2441: ATPase component of general energizing module of ECF transporters / ATPase component of general energizing module of ECF transporters |
ATPase component of general energizing module of ECF transporters / ATPase component of general energizing module of ECF transporters |
| ecfT |
|
Gene: Chy400_0857: Transmembrane component of general energizing module of ECF transporters |
Gene: Rcas_4125: Transmembrane component of general energizing module of ECF transporters |
Gene: RoseRS_1922: Transmembrane component of general energizing module of ECF transporters |
Gene: Haur_2440: Transmembrane component of general energizing module of ECF transporters |
Transmembrane component of general energizing module of ECF transporters |
| thiD |
Gene: Cagg_3167: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Chy400_0399: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Rcas_4126: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: RoseRS_1921: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Haur_2438: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| cytX |
|
*
Chloroflexus sp. Y-400-fl Site: position = -202 score = 59.19 sequence = ACAGCGTGTATGAGG... Gene: Chy400_0859: Predicted hydroxymethylpyrimidine transporter CytX |
|
*
Roseiflexus sp. RS-1 Site: position = -175 score = 73.77 sequence = TAAGCGTGTATGAGG... Gene: RoseRS_2771: Predicted hydroxymethylpyrimidine transporter CytX |
|
Predicted hydroxymethylpyrimidine transporter CytX |
| CRON 4. | ||||||
| tenA |
|
*
Chloroflexus sp. Y-400-fl Site: position = -193 score = 56.17 sequence = GTGTTCCGTAGGGGC... Gene: Chy400_0862: Thiaminase II (EC 3.5.99.2) |
*
Roseiflexus castenholzii DSM 13941 Site: position = -241 score = 55.82 sequence = CAGTGTTCCGTAGGG... Gene: Rcas_1431: Thiaminase II (EC 3.5.99.2) |
*
Roseiflexus sp. RS-1 Site: position = -221 score = 60.4 sequence = TACCGTTCCGTAGGG... Gene: RoseRS_1028: Thiaminase II (EC 3.5.99.2) |
|
Thiaminase II (EC 3.5.99.2) |
| Cagg_0487 |
Gene: Cagg_0487: hypothetical protein |
Gene: Chy400_2977: hypothetical protein |
Gene: Rcas_1430: hypothetical protein |
Gene: RoseRS_1027: hypothetical protein |
|
hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |