Regulog T-box(Trp) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Trp-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Trp-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | 1 | 1 |
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus fermentum IFO 3956 | 1 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 1 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 9 | 3 |
| Lactobacillus casei ATCC 334 | 7 | 3 |
| Lactobacillus brevis ATCC 367 | 2 | 2 |
| Lactobacillus sakei subsp. sakei 23K | 1 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 7 | 1 |
| Lactobacillus rhamnosus GG | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| trpS |
Gene: OEOE_1800: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
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Lactobacillus reuteri JCM 1112 Site: position = -196 score = 37.18 sequence = TAAAATTAACTATAT... Gene: LAR_0194: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
Gene: lhv_0226: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
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Lactobacillus fermentum IFO 3956 Site: position = -218 score = 46.47 sequence = AATCAGACCGGGAAA... Gene: LAF_0067: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -206 score = 65.5 sequence = AATCTTCGTTGAACA... Gene: LSL_0218: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
Gene: LBUL_0293: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
Gene: LBA0209: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
Gene: LJ0198: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
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Lactobacillus plantarum WCFS1 Site: position = -246 score = 84.75 sequence = ATTAATCGTTGAAGA... Gene: lp_0434: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
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Lactobacillus casei ATCC 334 Site: position = -350 score = 72.79 sequence = TATTCACACAAACGA... Gene: LSEI_2624: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
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Lactobacillus brevis ATCC 367 Site: position = -223 score = 68.04 sequence = AGACTAACGATAAAA... Gene: LVIS_0448: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
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Lactobacillus sakei subsp. sakei 23K Site: position = -253 score = 86.18 sequence = AAACAGAGTGAAGGA... Gene: LSA0327: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
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Pediococcus pentosaceus ATCC 25745 Site: position = -215 score = 63.8 sequence = TTTAAAATGAAAGTA... Gene: PEPE_0256: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
Gene: LEUM_1856: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
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Lactobacillus rhamnosus GG Site: position = -226 score = 73.58 sequence = TATTCATACAAACGA... Gene: LGG_02609: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## type 2 |
| CRON 2. | ||||||||||||||||
| trpB |
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Gene: lp_1657: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: LSEI_0075: Tryptophan synthase beta chain (EC 4.2.1.20) |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -327 score = 67.78 sequence = TCATAAACTGATGAG... Gene: LEUM_1176: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: LGG_00099: Tryptophan synthase beta chain (EC 4.2.1.20) |
Tryptophan synthase beta chain (EC 4.2.1.20) |
| trpD |
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Gene: lp_1654: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
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Lactobacillus casei ATCC 334 Site: position = -468 score = 97.1 sequence = GAACAAACCGATGAT... Gene: LSEI_0078: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
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Gene: LEUM_1175: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: LGG_00102: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
| trpC |
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Gene: lp_1655: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: LSEI_0077: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
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Gene: LEUM_1174: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: LGG_00101: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
| trpF |
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Gene: lp_1656: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: LSEI_0076: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
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Gene: LSA0255: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
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Gene: LEUM_1173: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: LGG_00100: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
| trpA |
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Gene: lp_1658: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: LSEI_0074: Tryptophan synthase alpha chain (EC 4.2.1.20) |
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Gene: LEUM_1172: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: LGG_00098: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Tryptophan synthase alpha chain (EC 4.2.1.20) |
| trpE |
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*
Lactobacillus plantarum WCFS1 Site: position = -372 score = 77.74 sequence = TGAAACCGATGAAGT... Gene: lp_1652: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
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Gene: LEUM_1171: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
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Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
| trpG |
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Gene: lp_1653: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
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Gene: LEUM_1170: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
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Anthranilate synthase, amidotransferase component (EC 4.1.3.27) # TrpAb |
| CRON 3. | ||||||||||||||||
| oppA |
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Lactobacillus plantarum WCFS1 Site: position = -396 score = 84.08 sequence = TTATAAACCAATGAG... Gene: lp_0092: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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Lactobacillus casei ATCC 334 Site: position = -416 score = 89.92 sequence = ATGCAAACCTTTGAA... Gene: LSEI_2797: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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Lactobacillus brevis ATCC 367 Site: position = -376 score = 99.66 sequence = AAACAAACCATTGAA... Gene: LVIS_0057: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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Gene: LGG_02801: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |