Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog VanR - Xanthomonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Vanillate utilization
Effector: Vanillate
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Xylella fastidiosa 9a5c
Xanthomonas axonopodis pv. citri str. 306 3 2
Xanthomonas campestris pv. campestris str. ATCC 33913 3 2
Stenotrophomonas maltophilia K279a
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ligA
 
Xylella fastidiosa 9a5c
*2
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -246
score = 4.67
sequence = ATTGGCTCCATT

Site:
position = -141
score = 4.33
sequence = TTTGGATCCCAA

Site:
position = -88
score = 4.41
sequence = TTGGGATCCATT

Gene: XAC0878: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)

Gene: XAC0879: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
*2
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -90
score = 3.62
sequence = TTGGGATCCCAA

Site:
position = -142
score = 4.33
sequence = TTTGGATCCCAA

Site:
position = -247
score = 3.96
sequence = ATGGGCTCCATT

Gene: XCC0804: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)

Gene: XCC0805: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
 
Stenotrophomonas maltophilia K279a
Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
 
CRON 2.
vanR
 
Xylella fastidiosa 9a5c
*
Xanthomonas axonopodis pv. citri str. 306

Site:
position = -159
score = 4.48
sequence = AATGGATCCCAA

Site:
position = -1
score = 4.71
sequence = AATGGAGCCAAT

Site:
position = -106
score = 4.33
sequence = TTGGGATCCAAA

Gene: XAC0877: Transcriptional regulator for ferulate or vanillate catabolism
*
Xanthomonas campestris pv. campestris str. ATCC 33913

Site:
position = -158
score = 3.62
sequence = TTGGGATCCCAA

Site:
position = -1
score = 4.0
sequence = AATGGAGCCCAT

Site:
position = -106
score = 4.33
sequence = TTGGGATCCAAA

Gene: XCC0803: Transcriptional regulator for ferulate or vanillate catabolism
 
Stenotrophomonas maltophilia K279a
Transcriptional regulator for ferulate or vanillate catabolism
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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