Regulog VanR - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Vanillate utilization |
| Effector: | Vanillate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - VanR
- By TF family - GntR/Others
- By effector - Vanillate
- By pathway - Vanillate utilization
| Genome | Genes | Operons |
|---|---|---|
| Xylella fastidiosa 9a5c | ||
| Xanthomonas axonopodis pv. citri str. 306 | 3 | 2 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | 3 | 2 |
| Stenotrophomonas maltophilia K279a |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| ligA |
|
*2
Xanthomonas axonopodis pv. citri str. 306 Site: position = -246 score = 4.67 sequence = ATTGGCTCCATT Site: position = -141 score = 4.33 sequence = TTTGGATCCCAA Site: position = -88 score = 4.41 sequence = TTGGGATCCATT Gene: XAC0878: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) Gene: XAC0879: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) |
*2
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -90 score = 3.62 sequence = TTGGGATCCCAA Site: position = -142 score = 4.33 sequence = TTTGGATCCCAA Site: position = -247 score = 3.96 sequence = ATGGGCTCCATT Gene: XCC0804: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) Gene: XCC0805: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) |
|
Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) |
| CRON 2. | |||||
| vanR |
|
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -159 score = 4.48 sequence = AATGGATCCCAA Site: position = -1 score = 4.71 sequence = AATGGAGCCAAT Site: position = -106 score = 4.33 sequence = TTGGGATCCAAA Gene: XAC0877: Transcriptional regulator for ferulate or vanillate catabolism |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -158 score = 3.62 sequence = TTGGGATCCCAA Site: position = -1 score = 4.0 sequence = AATGGAGCCCAT Site: position = -106 score = 4.33 sequence = TTGGGATCCAAA Gene: XCC0803: Transcriptional regulator for ferulate or vanillate catabolism |
|
Transcriptional regulator for ferulate or vanillate catabolism |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |