Regulon of VanR in Xanthomonas axonopodis pv. citri str. 306
| Regulator type: | Transcription factor |
| TF locus tag: | XAC0877 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Vanillate utilization |
| Effector: | Vanillate |
| Regulog: | VanR - Xanthomonadales |
| Statistics of regulated genes: | |
| - Genes | 3 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - VanR
- By TF family - GntR/Others
- By effector - Vanillate
- By pathway - Vanillate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -246
Score: 4.7 Sequence: ATTGGCTCCATT
Position: -141
Score: 4.3 Sequence: TTTGGATCCCAA
Position: -88
Score: 4.4 Sequence: TTGGGATCCATT
Locus tag: XAC0878
Name: pcaH Funciton: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
Locus tag: XAC0879
Name: ligA Funciton: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) |
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pcaH
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Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
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ligA
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Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
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Position: -159
Score: 4.5 Sequence: AATGGATCCCAA
Position: -106
Score: 4.3 Sequence: TTGGGATCCAAA
Position: -1
Score: 4.7 Sequence: AATGGAGCCAAT
Locus tag: XAC0877
Name: vanR Funciton: Transcriptional regulator for ferulate or vanillate catabolism |
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vanR
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Transcriptional regulator for ferulate or vanillate catabolism
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |