Regulon of VanR in Xanthomonas campestris pv. campestris str. ATCC 33913

Properties
Regulator type:	Transcription factor
TF locus tag:	XCC0803
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Vanillate utilization
Effector:	Vanillate
Regulog:	VanR - Xanthomonadales
Statistics of regulated genes:
- Genes	3
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Xanthomonadales
By trascription factor - VanR
By TF family - GntR/Others
By effector - Vanillate
By pathway - Vanillate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -158 Score: 3.6 Sequence: TTGGGATCCCAA Position: -106 Score: 4.3 Sequence: TTGGGATCCAAA Position: -1 Score: 4 Sequence: AATGGAGCCCAT Locus tag: XCC0803 Name: vanR Funciton: Transcriptional regulator for ferulate or vanillate catabolism
	XCC0803	vanR	Transcriptional regulator for ferulate or vanillate catabolism
Position: -247 Score: 4 Sequence: ATGGGCTCCATT Position: -142 Score: 4.3 Sequence: TTTGGATCCCAA Position: -90 Score: 3.6 Sequence: TTGGGATCCCAA Locus tag: XCC0804 Name: pcaH Funciton: Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) Locus tag: XCC0805 Name: ligA Funciton: Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)
	XCC0804	pcaH	Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)
	XCC0805	ligA	Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD