Regulog LexA - Rhodospirillales
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Rhodospirillum rubrum ATCC 11170 | 3 | 3 |
| Magnetospirillum magnetotacticum MS-1 | 6 | 6 |
| Magnetospirillum magneticum AMB-1 | 5 | 5 |
| Azospirillum sp. B510 | 6 | 6 |
| Rhodospirillum centenum SW | 5 | 5 |
| Gluconacetobacter diazotrophicus PAl 5 | 6 | 6 |
| Acetobacter pasteurianus IFO 3283-01 | 6 | 6 |
| Gluconobacter oxydans 621H | 5 | 5 |
| Granulibacter bethesdensis CGDNIH1 | 5 | 5 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| lexA |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -114 score = 0.87413 sequence = GAACCAAAGTAGAAC Gene: Rru_A1898: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Magnetospirillum magnetotacticum MS-1 Site: position = -120 score = -0.582136 sequence = AAACAAAACGGAATC Site: position = -48 score = 4.55665 sequence = GTTTGTTCTTTGTTC Gene: Magn03009696: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Magnetospirillum magneticum AMB-1 Site: position = -118 score = -0.582136 sequence = AAACAAAACGGAATC Site: position = -46 score = 4.55665 sequence = GTTTGTTCTTTGTTC Gene: amb2866: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Azospirillum sp. B510 Site: position = -74 score = 0.754072 sequence = GAACCAAACTAGAAC Gene: AZL_016060: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Rhodospirillum centenum SW Site: position = -50 score = 4.38095 sequence = GTTCCGGTAATGTTC Site: position = -76 score = 0.754072 sequence = GAACCAAACTAGAAC Gene: RC1_1189: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -71 score = 4.48197 sequence = GTTTCCTGTTTGTTC Gene: Gdia_0145: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -64 score = 1.85836 sequence = GAACTTATATAGAAC Gene: APA01_10940: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Gluconobacter oxydans 621H Site: position = -24 score = 1.62017 sequence = GAACCTATAAGGAAC Gene: GOX2276: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Granulibacter bethesdensis CGDNIH1 Site: position = -62 score = 4.34278 sequence = GTTGCCCGTTTGTTC Gene: GbCGDNIH1_0816: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 2. | ||||||||||
| dinB |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -54 score = 1.62792 sequence = GAACATTTAGGGTAC Gene: Rru_A3530: DNA polymerase IV (EC 2.7.7.7) |
*
Magnetospirillum magnetotacticum MS-1 Site: position = -95 score = 2.31712 sequence = GAACATATGGTGATC Gene: Magn03009220: DNA polymerase IV (EC 2.7.7.7) |
*
Magnetospirillum magneticum AMB-1 Site: position = 4 score = 2.31712 sequence = GAACATATGGTGATC Gene: amb0623: DNA polymerase IV (EC 2.7.7.7) |
Gene: AZL_d01040: DNA polymerase IV (EC 2.7.7.7) |
Gene: RC1_1534: DNA polymerase IV (EC 2.7.7.7) |
Gene: Gdia_1185: DNA polymerase IV (EC 2.7.7.7) |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -50 score = 4.57432 sequence = GTTTTCTGTTTGTTC Gene: APA01_02490: DNA polymerase IV (EC 2.7.7.7) |
*
Gluconobacter oxydans 621H Site: position = -39 score = 4.59466 sequence = GATCTTGTTTCGTTC Gene: GOX0844: DNA polymerase IV (EC 2.7.7.7) |
Gene: GbCGDNIH1_0216: DNA polymerase IV (EC 2.7.7.7) |
DNA polymerase IV (EC 2.7.7.7) |
| CRON 3. | ||||||||||
| yoaA |
Gene: Rru_A3036: DinG family ATP-dependent helicase |
*
Magnetospirillum magnetotacticum MS-1 Site: position = -54 score = 3.8834 sequence = GTGCACCAATCGTTC Gene: Magn03008981: DinG family ATP-dependent helicase |
*
Magnetospirillum magneticum AMB-1 Site: position = -33 score = 3.8834 sequence = GTGCACCAATCGTTC Gene: amb3608: DinG family ATP-dependent helicase |
Gene: AZL_024120: DinG family ATP-dependent helicase |
*
Rhodospirillum centenum SW Site: position = -86 score = 4.60714 sequence = GTTCACCTTTTGTTG Gene: RC1_3311: DinG family ATP-dependent helicase |
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -20 score = 4.30517 sequence = GTGCCCTATATGTTC Gene: Gdia_0269: DinG family ATP-dependent helicase |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -50 score = 4.33008 sequence = GTTCTTCATATGTTG Gene: APA01_17830: DinG family ATP-dependent helicase |
*
Gluconobacter oxydans 621H Site: position = -71 score = 4.09341 sequence = TTTCACGTTCCGTTC Gene: GOX1904: DinG family ATP-dependent helicase |
Gene: GbCGDNIH1_2175: DinG family ATP-dependent helicase |
DinG family ATP-dependent helicase |
| CRON 4. | ||||||||||
| dnaB |
Gene: Rru_A0410: Replicative DNA helicase (EC 3.6.1.-) |
*2
Magnetospirillum magnetotacticum MS-1 Site: position = -254 score = 4.68263 sequence = GTTCTCAATCCGTTC Gene: Magn03007150: Replicative DNA helicase (EC 3.6.1.-) Gene: Magn03008613: Replicative DNA helicase (EC 3.6.1.-) |
Gene: amb2097: Replicative DNA helicase (EC 3.6.1.-) |
*
Azospirillum sp. B510 Site: position = -33 score = 4.34511 sequence = GTTCCCGTTCCGTTT Gene: AZL_e01730: Replicative DNA helicase (EC 3.6.1.-) |
Gene: RC1_1577: Replicative DNA helicase (EC 3.6.1.-) |
Gene: Gdia_1848: Replicative DNA helicase (EC 3.6.1.-) |
Gene: APA01_06910: Replicative DNA helicase (EC 3.6.1.-) |
Gene: GOX1206: Replicative DNA helicase (EC 3.6.1.-) |
Gene: GbCGDNIH1_2217: Replicative DNA helicase (EC 3.6.1.-) |
Replicative DNA helicase (EC 3.6.1.-) |
| CRON 5. | ||||||||||
| PF04055 |
|
|
|
*
Azospirillum sp. B510 Site: position = -41 score = 4.97906 sequence = GTTCACTTTACGTTC Gene: AZL_026530: Radical SAM domain protein |
*
Rhodospirillum centenum SW Site: position = -9 score = 5.11134 sequence = GTTCTTGATATGTTC Gene: RC1_3178: Radical SAM domain protein |
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -47 score = 5.51668 sequence = GTTCCCGTTTTGTTC Gene: Gdia_3517: Radical SAM domain protein |
|
|
*
Granulibacter bethesdensis CGDNIH1 Site: position = -71 score = 4.6169 sequence = GTTCATTCATTGTTC Gene: GbCGDNIH1_1856: Radical SAM domain protein |
Radical SAM domain protein |
| CRON 6. | ||||||||||
| rmuC |
Gene: Rru_A3348: DNA recombination protein RmuC |
*
Magnetospirillum magnetotacticum MS-1 Site: position = -26 score = 5.03758 sequence = GTTCCCGTAATGTTC Gene: Magn03010153: DNA recombination protein RmuC |
*
Magnetospirillum magneticum AMB-1 Site: position = 16 score = 5.03758 sequence = GTTCCCGTAATGTTC Gene: amb4124: DNA recombination protein RmuC |
|
|
Gene: Gdia_2949: DNA recombination protein RmuC |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = 4 score = 4.31519 sequence = GTTCCATAATTGTTC Gene: APA01_09170: DNA recombination protein RmuC |
Gene: GOX0396: DNA recombination protein RmuC |
Gene: GbCGDNIH1_2169: DNA recombination protein RmuC |
DNA recombination protein RmuC |
| CRON 7. | ||||||||||
| recG |
Gene: Rru_A1728: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
2
Magnetospirillum magnetotacticum MS-1 Gene: Magn03008240: ATP-dependent DNA helicase RecG (EC 3.6.1.-) Gene: Magn03003751: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
Gene: amb2467: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
Gene: AZL_016620: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
Gene: RC1_1265: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -111 score = 4.46382 sequence = GGTTTCGTTTTGTTC Gene: Gdia_0107: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
Gene: APA01_11040: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
*
Gluconobacter oxydans 621H Site: position = -90 score = 4.46382 sequence = GGTTTCGTTTTGTTC Gene: GOX0056: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
Gene: GbCGDNIH1_0834: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
| CRON 8. | ||||||||||
| uvrA |
Gene: Rru_A1752: Excinuclease ABC subunit A |
Gene: Magn03007611: Excinuclease ABC subunit A |
Gene: amb2469: Excinuclease ABC subunit A |
*
Azospirillum sp. B510 Site: position = -9 score = 1.70537 sequence = GAACACACCATGAAC Gene: AZL_014850: Excinuclease ABC subunit A |
*
Rhodospirillum centenum SW Site: position = -9 score = 1.51927 sequence = GAACACAGCATGAAC Site: position = -236 score = 1.15371 sequence = GAACATTTCAGGAAC Gene: RC1_1053: Excinuclease ABC subunit A |
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -65 score = 1.56787 sequence = GAACAGAGTATGAAC Gene: Gdia_0538: Excinuclease ABC subunit A |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -32 score = 0.600018 sequence = GGACAAAACAGGAAC Gene: APA01_00110: Excinuclease ABC subunit A |
Gene: GOX0892: Excinuclease ABC subunit A |
*
Granulibacter bethesdensis CGDNIH1 Site: position = 25 score = 1.11869 sequence = GAACTTTTCCAGAAC Gene: GbCGDNIH1_1221: Excinuclease ABC subunit A |
Excinuclease ABC subunit A |
| CRON 9. | ||||||||||
| parC |
Gene: Rru_A1848: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: Magn03006127: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: amb2585: Topoisomerase IV subunit A (EC 5.99.1.-) |
*
Azospirillum sp. B510 Site: position = -56 score = 1.32323 sequence = GAACGTTACGCGAAC Gene: AZL_018280: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: RC1_1481: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: Gdia_3350: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: APA01_19400: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: GOX0073: Topoisomerase IV subunit A (EC 5.99.1.-) |
*
Granulibacter bethesdensis CGDNIH1 Site: position = -9 score = 0.182504 sequence = AAACGGAACGTGAAC Gene: GbCGDNIH1_0995: Topoisomerase IV subunit A (EC 5.99.1.-) |
Topoisomerase IV subunit A (EC 5.99.1.-) |
| CRON 10. | ||||||||||
| recA |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -68 score = 0.954164 sequence = GAACAAAAAGAGTAC Site: position = -104 score = 4.35265 sequence = GATCTTGTTCTGTTC Gene: Rru_A2819: Recombinase A |
*
Magnetospirillum magnetotacticum MS-1 Site: position = -98 score = 4.69373 sequence = GTTCTCCTCTCGTTC Gene: Magn03011075: Recombinase A |
*
Magnetospirillum magneticum AMB-1 Site: position = -110 score = 1.09833 sequence = GAACTGAAATGGAAC Gene: amb0622: Recombinase A |
*
Azospirillum sp. B510 Site: position = -103 score = 0.185605 sequence = GAACGCACCGGAAAC Gene: AZL_012130: Recombinase A |
*
Rhodospirillum centenum SW Site: position = -104 score = 0.840161 sequence = GAACATAGAGAGAAC Gene: RC1_0899: Recombinase A |
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -135 score = 4.5335 sequence = GATCATGTTTTGTTC Gene: Gdia_0513: Recombinase A |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -33 score = 4.42401 sequence = GTTGCCAATTTGTTC Gene: APA01_00440: Recombinase A |
*
Gluconobacter oxydans 621H Site: position = -116 score = 2.11499 sequence = GAACATTTTGCGAAC Gene: GOX1522: Recombinase A |
*
Granulibacter bethesdensis CGDNIH1 Site: position = -108 score = 2.49634 sequence = GAACATATTATGAAC Gene: GbCGDNIH1_1384: Recombinase A |
Recombinase A |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |