Regulog RbsR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Ribose utilization
Effector:	Ribose
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - RbsR
By TF family - LacI
By effector - Ribose
By pathway - Ribose utilization

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	6	1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	6	1
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
rbsB	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -124 score = 6.80178 sequence = AAGCGCAAACGTTTGCGCAA Gene: Aave_4196: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -95 score = 6.62679 sequence = ATTAGCAAACGTTTGCGCAA Gene: Vapar_4636: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_2133: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
rbsA	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4197: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4637: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_2132: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
rbsC	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4198: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4638: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_2131: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
rbsR	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4199: Transcriptional repressor of ribose utilization, LacI family	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4639: Transcriptional repressor of ribose utilization, LacI family	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Transcriptional repressor of ribose utilization, LacI family
rbsK	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4200: Ribokinase (EC 2.7.1.15)	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4640: Ribokinase (EC 2.7.1.15)	Verminephrobacter eiseniae EF01-2 Gene: Veis_2130: Ribokinase (EC 2.7.1.15)	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Ribokinase (EC 2.7.1.15)
rbsD	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4201: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4641: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --