Regulog RbsR - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Ribose utilization
Effector:	Ribose
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By trascription factor - RbsR
By TF family - LacI
By effector - Ribose
By pathway - Ribose utilization

Statistics of regulated genes
Genome	Genes	Operons
Ralstonia solanacearum GMI1000	5	1
Ralstonia pickettii 12J	5	1
Ralstonia metallidurans CH34
Ralstonia eutropha JMP134
Ralstonia eutropha H16
Cupriavidus taiwanensis

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
rbsB	* Ralstonia solanacearum GMI1000 Site: position = -108 score = 6.72758 sequence = ATACGCAAACGTTTGCGAGC Gene: RS04260: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	* Ralstonia pickettii 12J Site: position = -119 score = 6.90418 sequence = GTACGCAAACGTTTGCGAAG Gene: Rpic_0882: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
rbsA	Ralstonia solanacearum GMI1000 Gene: RS04262: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Ralstonia pickettii 12J Gene: Rpic_0881: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
rbsC	Ralstonia solanacearum GMI1000 Gene: RS04264: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Ralstonia pickettii 12J Gene: Rpic_0880: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
rbsR	Ralstonia solanacearum GMI1000 Gene: RS04266: Transcriptional repressor of ribose utilization, LacI family	Ralstonia pickettii 12J Gene: Rpic_0879: Transcriptional repressor of ribose utilization, LacI family	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	Transcriptional repressor of ribose utilization, LacI family
rbsK	Ralstonia solanacearum GMI1000 Gene: RS04269: Ribokinase (EC 2.7.1.15)	Ralstonia pickettii 12J Gene: Rpic_0878: Ribokinase (EC 2.7.1.15)	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	Ribokinase (EC 2.7.1.15)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --