Regulog UxuR - Pasteurellales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | Glucuronate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ExuR/UxuR
- By taxonomy - Pasteurellales
- By TF family - GntR/Others
- By effector - Glucuronate
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Haemophilus influenzae Rd KW20 | 9 | 2 |
| Aggregatibacter aphrophilus NJ8700 | ||
| Pasteurella multocida subsp. multocida str. Pm70 | ||
| Mannheimia succiniciproducens MBEL55E | 10 | 2 |
| Actinobacillus succinogenes 130Z | 9 | 3 |
| Haemophilus somnus 2336 | 13 | 5 |
| Actinobacillus pleuropneumoniae serovar 7 str. AP76 | ||
| Haemophilus ducreyi 35000HP | ||
| Haemophilus parasuis SH0165 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| uxuQ |
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*
Mannheimia succiniciproducens MBEL55E Site: position = -178 score = 5.02396 sequence = CAAATGGTATACCAAAAT Site: position = -63 score = 6.09772 sequence = ATATTGGTTTACCAATTT Gene: MS0541: predicted glucuronate TRAP transporter, small subunit |
*
Actinobacillus succinogenes 130Z Site: position = -171 score = 5.22353 sequence = AAAATGGTATACCGATTT Site: position = -56 score = 5.86956 sequence = ATATTGGTTTACCAATTA Gene: Asuc_0147: predicted glucuronate TRAP transporter, small subunit |
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predicted glucuronate TRAP transporter, small subunit |
| uxuM |
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Gene: MS0540: predicted glucuronate TRAP transporter, large subunit |
Gene: Asuc_0148: predicted glucuronate TRAP transporter, large subunit |
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predicted glucuronate TRAP transporter, large subunit |
| lfaA |
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Gene: MS0539: Alpha-glucosidase (EC 3.2.1.20) |
Gene: Asuc_0149: Alpha-glucosidase (EC 3.2.1.20) |
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Alpha-glucosidase (EC 3.2.1.20) |
| uxuR |
*
Haemophilus influenzae Rd KW20 Site: position = -78 score = 4.73721 sequence = TTTTTGGAATACCAAATA Site: position = -28 score = 5.63224 sequence = AAATTGGAATACCAATTT Gene: HI0054: Hexuronate utilization operon transcriptional repressor UxuR |
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Gene: MS0538: Hexuronate utilization operon transcriptional repressor UxuR |
Gene: Asuc_0150: Hexuronate utilization operon transcriptional repressor UxuR |
*2
Haemophilus somnus 2336 Site: position = -68 score = 4.52116 sequence = AATTTGGTGAACCAGAAA Site: position = -196 score = 5.22709 sequence = AAACTGGTAAACCAGTTA Gene: HSM_0414: Hexuronate utilization operon transcriptional repressor UxuR Site: position = -78 score = 5.13342 sequence = TTTTTGGTATTCCAATTT Gene: HSM_1913: Hexuronate utilization operon transcriptional repressor UxuR |
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Hexuronate utilization operon transcriptional repressor UxuR |
| uxuA |
Gene: HI0055: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: MS0537: Mannonate dehydratase (EC 4.2.1.8) |
Gene: Asuc_0151: Mannonate dehydratase (EC 4.2.1.8) |
Gene: HSM_0415: Mannonate dehydratase (EC 4.2.1.8) |
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Mannonate dehydratase (EC 4.2.1.8) |
| CRON 2. | ||||||||||
| HI0053 |
*
Haemophilus influenzae Rd KW20 Site: position = -150 score = 5.63716 sequence = AAATTGGTATTCCAATTT Site: position = -100 score = 4.6572 sequence = TATTTGGTATTCCAAAAA Gene: HI0053: Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-) |
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*
Haemophilus somnus 2336 Site: position = -101 score = 5.05053 sequence = AAATTGGAATACCAAAAA Gene: HSM_1914: Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-) |
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Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-) |
| uxuP |
Gene: HI0052: predicted glucuronate TRAP transporter, periplasmic subunit |
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*2
Mannheimia succiniciproducens MBEL55E Site: position = -69 score = 5.98817 sequence = AAATTGGTAAACCAATAT Gene: MS0542: predicted glucuronate TRAP transporter, periplasmic subunit Gene: MS0526: predicted glucuronate TRAP transporter, periplasmic subunit |
*2
Actinobacillus succinogenes 130Z Site: position = -85 score = 5.12543 sequence = AAATCGGTATACCATTTT Site: position = -200 score = 5.81867 sequence = TAATTGGTAAACCAATAT Gene: Asuc_0146: predicted glucuronate TRAP transporter, periplasmic subunit Gene: Asuc_0145: predicted glucuronate TRAP transporter, periplasmic subunit |
Gene: HSM_1915: predicted glucuronate TRAP transporter, periplasmic subunit |
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predicted glucuronate TRAP transporter, periplasmic subunit |
| uxuQ |
Gene: HI0051: predicted hexuronate TRAP transporter, small subunit |
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Gene: MS0527: predicted hexuronate TRAP transporter, small subunit |
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Gene: HSM_1916: predicted hexuronate TRAP transporter, small subunit |
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predicted hexuronate TRAP transporter, small subunit |
| uxuM |
Gene: HI0050m: predicted hexuronate TRAP transporter, large subunit |
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Gene: MS0528: predicted hexuronate TRAP transporter, large subunit |
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Gene: HSM_1917: predicted hexuronate TRAP transporter, large subunit |
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predicted hexuronate TRAP transporter, large subunit |
| kdgK |
Gene: HI0049: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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Gene: MS0545: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
Gene: Asuc_0153: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
| uxuB |
Gene: HI0048: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: MS0543: D-mannonate oxidoreductase (EC 1.1.1.57) |
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*
Haemophilus somnus 2336 Site: position = -199 score = 4.82761 sequence = TTTCTGGTTCACCAAATT Site: position = -71 score = 5.31038 sequence = TAACTGGTTTACCAGTTT Gene: HSM_0413: D-mannonate oxidoreductase (EC 1.1.1.57) |
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D-mannonate oxidoreductase (EC 1.1.1.57) |
| eda |
Gene: HI0047: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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Gene: MS0546: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: Asuc_0152: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: HSM_0408: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| uxaC |
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Gene: MS0544: Uronate isomerase (EC 5.3.1.12) |
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Gene: HSM_0409: Uronate isomerase (EC 5.3.1.12) |
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Uronate isomerase (EC 5.3.1.12) |
| uidA |
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*
Haemophilus somnus 2336 Site: position = -119 score = 5.62151 sequence = AAATTGGTTTACCAAAAA Gene: HSM_0411: beta-D-glucuronidase |
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beta-D-glucuronidase |
| uidB |
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Gene: HSM_0410: glucuronides GPH transporter |
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glucuronides GPH transporter |
| uxaA |
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Gene: MS0530: Altronate hydrolase (EC 4.2.1.7) |
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Actinobacillus succinogenes 130Z Site: position = -227 score = 5.21752 sequence = ACATTGGTTGACGAATTT Gene: Asuc_0154: Altronate hydrolase (EC 4.2.1.7) |
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Altronate hydrolase (EC 4.2.1.7) |
| HSM_0412 |
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Gene: HSM_0412: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |