Regulog Fur - Xanthomonadales

Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - FUR
- By TF family - FUR
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
Genome | Genes | Operons |
---|---|---|
Xylella fastidiosa 9a5c | 10 | 5 |
Xanthomonas axonopodis pv. citri str. 306 | 19 | 11 |
Xanthomonas campestris pv. campestris str. ATCC 33913 | 20 | 11 |
Stenotrophomonas maltophilia K279a | 39 | 17 |
Genes | Function | ||||
---|---|---|---|---|---|
CRON 1. | |||||
bfd |
*
Xylella fastidiosa 9a5c Site: position = -64 score = 5.36465 sequence = AATTGACATTCATTCTCATCT Gene: XF0394: Bacterioferritin-associated ferredoxin |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -73 score = 5.04459 sequence = AATTGACACCTATTCTCGTTT Gene: XAC0492: Bacterioferritin-associated ferredoxin |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -73 score = 5.04459 sequence = AATTGACACCTATTCTCGTTT Gene: XCC0481: Bacterioferritin-associated ferredoxin |
*
Stenotrophomonas maltophilia K279a Site: position = -73 score = 5.38699 sequence = GATTGACAACCATTCTCGTTT Gene: Smlt4298: Bacterioferritin-associated ferredoxin |
Bacterioferritin-associated ferredoxin |
bfr |
*
Xylella fastidiosa 9a5c Site: position = -78 score = 4.88222 sequence = TAATGAGCACGATTTTCGTTC Gene: XF0395: Bacterioferritin |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -80 score = 4.35493 sequence = AACTGATCACGATTCGCGTTC Gene: XAC0493: Bacterioferritin |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -80 score = 4.35493 sequence = AACTGATCACGATTCGCGTTC Gene: XCC0482: Bacterioferritin |
*
Stenotrophomonas maltophilia K279a Site: position = -81 score = 4.24574 sequence = CAATGCGCACGATTCGCGTTC Gene: Smlt4297: Bacterioferritin |
Bacterioferritin |
CRON 2. | |||||
fhuA |
*
Xylella fastidiosa 9a5c Site: position = -112 score = 5.62784 sequence = TATTGAAAATCATTCTCCTTT Gene: XF0599: Ferrichrome-iron receptor, TonB-dependent |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -252 score = 5.46553 sequence = AAAGAAGAATGATTTGCATTT Gene: XAC2941: Ferrichrome-iron receptor, TonB-dependent |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -263 score = 5.46553 sequence = AAAGAAGAATGATTTGCATTT Gene: XCC2772: Ferrichrome-iron receptor, TonB-dependent |
Gene: Smlt1148: Ferrichrome-iron receptor, TonB-dependent |
Ferrichrome-iron receptor, TonB-dependent |
piuC |
Gene: XF0598: Iron-uptake factor PiuC |
Gene: XAC2942: Iron-uptake factor PiuC |
Gene: XCC2773: Iron-uptake factor PiuC |
Gene: Smlt1146: Iron-uptake factor PiuC |
Iron-uptake factor PiuC |
XAC2943 |
|
Gene: XAC2943: FOG: TPR repeat, SEL1 subfamily |
Gene: XCC2774: FOG: TPR repeat, SEL1 subfamily |
Gene: Smlt1147: FOG: TPR repeat, SEL1 subfamily |
FOG: TPR repeat, SEL1 subfamily |
pepSY |
Gene: XF0597: putative transmembrane PepSY family protein |
Gene: XAC2944: putative transmembrane PepSY family protein |
Gene: XCC2775: putative transmembrane PepSY family protein |
*
Stenotrophomonas maltophilia K279a Site: position = -85 score = 4.59134 sequence = AATTGCGAGCTATTCTCATCA Gene: Smlt1142: putative transmembrane PepSY family protein |
putative transmembrane PepSY family protein |
COG3656 |
Gene: XF0596: Predicted periplasmic protein |
Gene: XAC2945: Predicted periplasmic protein |
Gene: XCC2776: Predicted periplasmic protein |
Gene: Smlt1141: Predicted periplasmic protein |
Predicted periplasmic protein |
Smlt1149 |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -66 score = 5.07384 sequence = ATATGCGAATCATTATCGTTG Gene: Smlt1149: hypothetical protein |
hypothetical protein |
CRON 3. | |||||
hemP |
|
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -2 score = 6.14308 sequence = AAATGAGAATGGTTATTATTT Site: position = -26 score = 4.88495 sequence = AAATGAGAATGGCTCTTGATC Gene: XAC0822: Hemin uptake protein HemP |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -2 score = 6.14308 sequence = AAATGAGAATGGTTATTATTT Site: position = -26 score = 4.88495 sequence = AAATGAGAATGGCTCTTGATC Gene: XCC0767: Hemin uptake protein HemP |
*
Stenotrophomonas maltophilia K279a Site: position = -45 score = 6.12706 sequence = AACTGAGAATCATTATCATTT Site: position = -69 score = 5.13479 sequence = AATTGAGAATGGTTGTTGATT Gene: Smlt0794: Hemin uptake protein HemP |
Hemin uptake protein HemP |
hemR |
|
Gene: XAC0823: Hemin uptake system outer membrane receptor, TonB-dependent |
Gene: XCC0768: Hemin uptake system outer membrane receptor, TonB-dependent |
Gene: Smlt0795: Hemin uptake system outer membrane receptor, TonB-dependent |
Hemin uptake system outer membrane receptor, TonB-dependent |
XAC0824 |
|
Gene: XAC0824: Hemin transport protein |
Gene: XCC0769: Hemin transport protein |
Gene: Smlt0796: Hemin transport protein |
Hemin transport protein |
CRON 4. | |||||
fhuA |
|
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -28 score = 5.23744 sequence = ATTTGATAACCATTCCCATTA Gene: XAC1435: Outer membrane receptor proteins, mostly Fe transport, TonB-dependent |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -28 score = 5.23744 sequence = ATTTGATAACCATTCCCATTA Gene: XCC1391: Outer membrane receptor proteins, mostly Fe transport, TonB-dependent |
*
Stenotrophomonas maltophilia K279a Site: position = -42 score = 5.86012 sequence = AAATGCTAATCTTTCTCATTT Gene: Smlt3022: Outer membrane receptor proteins, mostly Fe transport, TonB-dependent |
Outer membrane receptor proteins, mostly Fe transport, TonB-dependent |
CRON 5. | |||||
fpr |
Gene: XF1889: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -71 score = 5.47226 sequence = AAATGAGAGTTCATCTCATTT Gene: XAC1458: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -73 score = 5.47226 sequence = AAATGAGAGTTCATCTCATTT Gene: XCC1414: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
*
Stenotrophomonas maltophilia K279a Site: position = -61 score = 5.48721 sequence = CAATGAGAACCCATCTCATTT Gene: Smlt3227: Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
Ferredoxin--NADP(+) reductase (EC 1.18.1.2) |
CRON 6. | |||||
feoA |
*
Xylella fastidiosa 9a5c Site: position = -34 score = 4.68174 sequence = TATTGAGAACGATTCTTGTCA Gene: XF0932: Ferrous iron transport protein A |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -35 score = 4.63126 sequence = AATTGAGAACCATTCCTAACA Gene: XAC1854: Ferrous iron transport protein A |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -35 score = 4.63126 sequence = AATTGAGAACCATTCCTAACA Gene: XCC1834: Ferrous iron transport protein A |
*
Stenotrophomonas maltophilia K279a Site: position = -38 score = 4.47351 sequence = AATCGAGAACCATTTACATCC Gene: Smlt2210: Ferrous iron transport protein A |
Ferrous iron transport protein A |
feoB |
Gene: XF0933: Ferrous iron transport protein B |
Gene: XAC1855: Ferrous iron transport protein B |
Gene: XCC1835: Ferrous iron transport protein B |
Gene: Smlt2211: Ferrous iron transport protein B |
Ferrous iron transport protein B |
XF0934 |
Gene: XF0934: conserved hypothetical protein |
Gene: XAC1856: conserved hypothetical protein |
Gene: XCC1836: conserved hypothetical protein |
Gene: Smlt2212: conserved hypothetical protein |
conserved hypothetical protein |
CRON 7. | |||||
fhuE |
|
*2
Xanthomonas axonopodis pv. citri str. 306 Site: position = -120 score = 5.95085 sequence = AAATGTGAATCATTCCCATTA Gene: XAC3370: Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, TonB-dependent Gene: XAC3498: Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, TonB-dependent |
*2
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -121 score = 5.95085 sequence = AAATGTGAATCATTCCCATTA Gene: XCC3216: Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, TonB-dependent Gene: XCC3215: Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, TonB-dependent |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, TonB-dependent |
CRON 8. | |||||
fpvA |
|
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -175 score = 5.56948 sequence = AAACGATAACGATTTACATTT Gene: XAC0176: Putative receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid, TonB-dependent |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -167 score = 5.56948 sequence = AAACGATAACGATTTACATTT Gene: XCC0158: Putative receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid, TonB-dependent |
*
Stenotrophomonas maltophilia K279a Site: position = -136 score = 4.46017 sequence = TGTTAAGAATTATTTACATTT Gene: Smlt1233: Putative receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid, TonB-dependent |
Putative receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid, TonB-dependent |
CRON 9. | |||||
pfeA |
|
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -177 score = 4.90803 sequence = ATTTGAGAATGAATCGCATCT Gene: XAC3620: Outer membrane receptor for ferrienterochelin, TonB-dependent |
|
*
Stenotrophomonas maltophilia K279a Site: position = -142 score = 4.84844 sequence = ATTTGAGAATCACTCGCATTG Gene: Smlt1426: Outer membrane receptor for ferrienterochelin, TonB-dependent |
Outer membrane receptor for ferrienterochelin, TonB-dependent |
CRON 10. | |||||
fecI |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -28 score = 5.7748 sequence = TAATGGGAATCATTCGCATTA Gene: Smlt2848: Putative RNA polymerase sigma factor for iron metabolism |
Putative RNA polymerase sigma factor for iron metabolism |
fecR |
|
|
|
Gene: Smlt2849: Putative transmembrane FecR family iron uptake regulator protein |
Putative transmembrane FecR family iron uptake regulator protein |
fecA |
|
|
|
Gene: Smlt2850: putative TonB dependent extracellular heme-binding protein |
putative TonB dependent extracellular heme-binding protein |
CRON 11. | |||||
XAC0271 |
|
Gene: XAC0271: Putative iron uptake protein |
Gene: XCC0252: Putative iron uptake protein |
*
Stenotrophomonas maltophilia K279a Site: position = -126 score = 5.59226 sequence = AAATGCGAATGCCTATCATTT Gene: Smlt1567: Putative iron uptake protein |
Putative iron uptake protein |
pepSY |
|
Gene: XAC0270: putative transmembrane PepSY domain protein |
Gene: XCC0251: putative transmembrane PepSY domain protein |
Gene: Smlt1566: putative transmembrane PepSY domain protein |
putative transmembrane PepSY domain protein |
XAC0269 |
|
Gene: XAC0269: Putative iron uptake protein |
Gene: XCC0250: Putative iron uptake protein |
Gene: Smlt1565: Putative iron uptake protein |
Putative iron uptake protein |
CRON 12. | |||||
fecI2 |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -86 score = 5.38769 sequence = AAACGCGAACGGTTCCCATTA Gene: Smlt2664: putative RNA polymerase sigma factor for iron metabolism |
putative RNA polymerase sigma factor for iron metabolism |
fecR2 |
|
|
|
Gene: Smlt2665: putative iron uptake transcriptional regulator protein |
putative iron uptake transcriptional regulator protein |
fecA2 |
|
|
|
Gene: Smlt2666: putative TonB-dependent ferric siderophore receptor |
putative TonB-dependent ferric siderophore receptor |
CRON 13. | |||||
Smlt1145 |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -99 score = 5.27106 sequence = TTTTGGCAATCATTCTCATTT Site: position = -76 score = 4.13244 sequence = AACGGCTAACAGCTCTCATTA Gene: Smlt1145: putative transmembrane protein |
putative transmembrane protein |
bfrA |
|
|
|
Gene: Smlt1144c: putative exogenous ferric siderophore receptor, TonB-dependent |
putative exogenous ferric siderophore receptor, TonB-dependent |
CRON 14. | |||||
fpvA |
|
|
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -72 score = 5.18391 sequence = TAATAATATTCATTCTCACTT Gene: XCC3518: Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, TonB-dependent |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, TonB-dependent |
CRON 15. | |||||
COG1272 |
*
Xylella fastidiosa 9a5c Site: position = -37 score = 5.10574 sequence = AAATGCGAATTATTCGCGGTT Gene: XF0175: Predicted membrane protein hemolysin III homolog |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -37 score = 4.26428 sequence = CGATGCGAATCGCTCGCAATT Gene: XAC3043: Predicted membrane protein hemolysin III homolog |
Gene: XCC2860: Predicted membrane protein hemolysin III homolog |
Gene: Smlt3638: Predicted membrane protein hemolysin III homolog |
Predicted membrane protein hemolysin III homolog |
CRON 16. | |||||
fecI3 |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -69 score = 5.05638 sequence = GAACGTGACTGATTCTCATTA Gene: Smlt3900: putative RNA polymerase ECF sigma factor for iron metabolism |
putative RNA polymerase ECF sigma factor for iron metabolism |
fecR3 |
|
|
|
Gene: Smlt3899: putative transmembrane FecR sensor protein |
putative transmembrane FecR sensor protein |
fecA3 |
|
|
|
Gene: Smlt3898: putative extracellular heme-binding protein, TonB-dependent |
putative extracellular heme-binding protein, TonB-dependent |
CRON 17. | |||||
COG4771 |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = 4 score = 4.99324 sequence = AATCAGCAATAATTCTCATTT Gene: Smlt2858: Outer membrane receptor for ferrienterochelin, TonB-dependent |
Outer membrane receptor for ferrienterochelin, TonB-dependent |
CRON 18. | |||||
fhuE |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -94 score = 4.81624 sequence = AAATAGGAATAGTTCGTATTA Gene: Smlt3999: Putative TonB-dependent receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid, TonB-dependent |
Putative TonB-dependent receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid, TonB-dependent |
CRON 19. | |||||
fecI4 |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -87 score = 4.61891 sequence = GGATGCAAATGATTCTCTTTT Gene: Smlt2935: putative ECF-family sigma factor for iron metabolism |
putative ECF-family sigma factor for iron metabolism |
fecR4 |
|
|
|
Gene: Smlt2936: putative transcriptional regulatory FecR iron transport regulator family protein |
putative transcriptional regulatory FecR iron transport regulator family protein |
fecA4 |
|
|
|
Gene: Smlt2937: putative TonB dependent receptor protein |
putative TonB dependent receptor protein |
Smlt2938 |
|
|
|
Gene: Smlt2938: putative iron regulated lipoprotein |
putative iron regulated lipoprotein |
Smlt2939 |
|
|
|
Gene: Smlt2939: putative TonB-like protein |
putative TonB-like protein |
CRON 20. | |||||
COG4773 |
|
|
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -31 score = 4.61897 sequence = GGATAAGAATCGTTATCATTG Gene: XCC4162: Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, TonB-dependent |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, TonB-dependent |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |