Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog GlcC - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Glycolate utilization
Effector: Glycolate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 5 2
Pseudomonas entomophila L48
Pseudomonas putida KT2440 5 2
Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas fluorescens Pf-5 5 2
Pseudomonas mendocina ymp 6 2
Pseudomonas stutzeri A1501 6 2
Azotobacter vinelandii AvOP 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glcD
*
Pseudomonas aeruginosa PAO1

Site:
position = -103
score = 5.18678
sequence = TACTGGTAGGACCAGTT

Site:
position = -190
score = 4.58113
sequence = CGCTGGTAGGACCAGTT

Gene: PA5355: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Pseudomonas entomophila L48

Gene: PSEEN3186: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
*
Pseudomonas putida KT2440

Site:
position = -107
score = 5.1314
sequence = AACTGGTAGGACCAGTC

Site:
position = -182
score = 4.17004
sequence = TGCTGGTAGGACCACTT

Gene: PP3745: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3555: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
*
Pseudomonas fluorescens Pf-5

Site:
position = -222
score = 4.30229
sequence = CACTGGTATGACCAGCC

Site:
position = -115
score = 4.59557
sequence = AAGTGGTTCGACCACTG

Gene: PFL_2269: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
*
Pseudomonas mendocina ymp

Site:
position = -115
score = 6.04131
sequence = AACTGGTCATACCAGCA

Site:
position = -224
score = 6.13829
sequence = AACTGGTCGTACCAGTT

Gene: Pmen_0203: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
*
Pseudomonas stutzeri A1501

Site:
position = -222
score = 5.15644
sequence = AGCTGGTAGGACCAGTT

Site:
position = -115
score = 5.56753
sequence = AACTGGTAGGACCAGTT

Gene: PST_0431: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
*
Azotobacter vinelandii AvOP

Site:
position = -157
score = 5.31373
sequence = AACTGGTATGACCAGCT

Site:
position = -255
score = 4.40378
sequence = AACTGGTAGGACCATGA

Gene: Avin_43330: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcE
 
Pseudomonas aeruginosa PAO1

Gene: PA5354: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Pseudomonas entomophila L48

Gene: PSEEN3187: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Pseudomonas putida KT2440

Gene: PP3746: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3556: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Pseudomonas fluorescens Pf-5

Gene: PFL_2268: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Pseudomonas mendocina ymp

Gene: Pmen_0202: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Pseudomonas stutzeri A1501

Gene: PST_0432: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
 
Azotobacter vinelandii AvOP

Gene: Avin_43320: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
glcF
 
Pseudomonas aeruginosa PAO1

Gene: PA5353: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Pseudomonas entomophila L48

Gene: PSEEN3188: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Pseudomonas putida KT2440

Gene: PP3747: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5

Gene: PFL_2267: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Pseudomonas mendocina ymp

Gene: Pmen_0201: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Pseudomonas stutzeri A1501

Gene: PST_0433: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Azotobacter vinelandii AvOP

Gene: Avin_43310: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF
glcG
 
Pseudomonas aeruginosa PAO1

Gene: PA5352: Hypothetical protein GlcG in glycolate utilization operon
 
Pseudomonas entomophila L48

Gene: PSEEN3189: Hypothetical protein GlcG in glycolate utilization operon
 
Pseudomonas putida KT2440

Gene: PP3748: Hypothetical protein GlcG in glycolate utilization operon
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3558: Hypothetical protein GlcG in glycolate utilization operon
 
Pseudomonas fluorescens Pf-5

Gene: PFL_2266: Hypothetical protein GlcG in glycolate utilization operon
 
Pseudomonas mendocina ymp

Gene: Pmen_0200: Hypothetical protein GlcG in glycolate utilization operon
 
Pseudomonas stutzeri A1501

Gene: PST_0434: Hypothetical protein GlcG in glycolate utilization operon
 
Azotobacter vinelandii AvOP

Gene: Avin_43300: Hypothetical protein GlcG in glycolate utilization operon
Hypothetical protein GlcG in glycolate utilization operon
glcB
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3559: Malate synthase G (EC 2.3.3.9)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_0199: Malate synthase G (EC 2.3.3.9)
 
Pseudomonas stutzeri A1501

Gene: PST_0435: Malate synthase G (EC 2.3.3.9)
 
Azotobacter vinelandii AvOP

Gene: Avin_43290: Malate synthase G (EC 2.3.3.9)
Malate synthase G (EC 2.3.3.9)
 
CRON 2.
glcC
*
Pseudomonas aeruginosa PAO1

Site:
position = -31
score = 6.17042
sequence = AACTGGTCCTACCAGCG

Site:
position = -118
score = 6.36778
sequence = AACTGGTCCTACCAGTA

Gene: PA5356: Glycolate utilization operon transcriptional activator GlcC
 
Pseudomonas entomophila L48
*
Pseudomonas putida KT2440

Site:
position = -77
score = 6.08116
sequence = GACTGGTCCTACCAGTT

Site:
position = -2
score = 5.84457
sequence = AAGTGGTCCTACCAGCA

Gene: PP3744: Glycolate utilization operon transcriptional activator GlcC
 
Pseudomonas syringae pv. tomato str. DC3000
*
Pseudomonas fluorescens Pf-5

Site:
position = -133
score = 4.03568
sequence = CAGTGGTCGAACCACTT

Site:
position = -26
score = 5.46557
sequence = GGCTGGTCATACCAGTG

Gene: PFL_2270: Glycolate utilization operon transcriptional activator GlcC
*
Pseudomonas mendocina ymp

Site:
position = -141
score = 4.68155
sequence = TGCTGGTATGACCAGTT

Site:
position = -32
score = 5.79702
sequence = AACTGGTACGACCAGTT

Gene: Pmen_0204: Glycolate utilization operon transcriptional activator GlcC
*
Pseudomonas stutzeri A1501

Site:
position = -134
score = 6.36778
sequence = AACTGGTCCTACCAGTT

Site:
position = -27
score = 6.20812
sequence = AACTGGTCCTACCAGCT

Gene: PST_0430: Glycolate utilization operon transcriptional activator GlcC
*
Azotobacter vinelandii AvOP

Site:
position = -30
score = 4.82327
sequence = TCATGGTCCTACCAGTT

Site:
position = -128
score = 5.78988
sequence = AGCTGGTCATACCAGTT

Gene: Avin_43340: Glycolate utilization operon transcriptional activator GlcC
Glycolate utilization operon transcriptional activator GlcC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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