Regulog GlcC - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Glycolate utilization |
| Effector: | Glycolate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - GlcC
- By TF family - GntR/Others
- By effector - Glycolate
- By pathway - Glycolate utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 5 | 2 |
| Pseudomonas entomophila L48 | ||
| Pseudomonas putida KT2440 | 5 | 2 |
| Pseudomonas syringae pv. tomato str. DC3000 | ||
| Pseudomonas fluorescens Pf-5 | 5 | 2 |
| Pseudomonas mendocina ymp | 6 | 2 |
| Pseudomonas stutzeri A1501 | 6 | 2 |
| Azotobacter vinelandii AvOP | 6 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| glcD |
*
Pseudomonas aeruginosa PAO1 Site: position = -103 score = 5.18678 sequence = TACTGGTAGGACCAGTT Site: position = -190 score = 4.58113 sequence = CGCTGGTAGGACCAGTT Gene: PA5355: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: PSEEN3186: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
*
Pseudomonas putida KT2440 Site: position = -107 score = 5.1314 sequence = AACTGGTAGGACCAGTC Site: position = -182 score = 4.17004 sequence = TGCTGGTAGGACCACTT Gene: PP3745: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: PSPTO3555: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
*
Pseudomonas fluorescens Pf-5 Site: position = -222 score = 4.30229 sequence = CACTGGTATGACCAGCC Site: position = -115 score = 4.59557 sequence = AAGTGGTTCGACCACTG Gene: PFL_2269: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
*
Pseudomonas mendocina ymp Site: position = -115 score = 6.04131 sequence = AACTGGTCATACCAGCA Site: position = -224 score = 6.13829 sequence = AACTGGTCGTACCAGTT Gene: Pmen_0203: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
*
Pseudomonas stutzeri A1501 Site: position = -222 score = 5.15644 sequence = AGCTGGTAGGACCAGTT Site: position = -115 score = 5.56753 sequence = AACTGGTAGGACCAGTT Gene: PST_0431: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
*
Azotobacter vinelandii AvOP Site: position = -157 score = 5.31373 sequence = AACTGGTATGACCAGCT Site: position = -255 score = 4.40378 sequence = AACTGGTAGGACCATGA Gene: Avin_43330: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
| glcE |
Gene: PA5354: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: PSEEN3187: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: PP3746: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: PSPTO3556: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: PFL_2268: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: Pmen_0202: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: PST_0432: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: Avin_43320: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
| glcF |
Gene: PA5353: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: PSEEN3188: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: PP3747: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
|
Gene: PFL_2267: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Pmen_0201: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: PST_0433: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Avin_43310: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
| glcG |
Gene: PA5352: Hypothetical protein GlcG in glycolate utilization operon |
Gene: PSEEN3189: Hypothetical protein GlcG in glycolate utilization operon |
Gene: PP3748: Hypothetical protein GlcG in glycolate utilization operon |
Gene: PSPTO3558: Hypothetical protein GlcG in glycolate utilization operon |
Gene: PFL_2266: Hypothetical protein GlcG in glycolate utilization operon |
Gene: Pmen_0200: Hypothetical protein GlcG in glycolate utilization operon |
Gene: PST_0434: Hypothetical protein GlcG in glycolate utilization operon |
Gene: Avin_43300: Hypothetical protein GlcG in glycolate utilization operon |
Hypothetical protein GlcG in glycolate utilization operon |
| glcB |
|
|
|
Gene: PSPTO3559: Malate synthase G (EC 2.3.3.9) |
|
Gene: Pmen_0199: Malate synthase G (EC 2.3.3.9) |
Gene: PST_0435: Malate synthase G (EC 2.3.3.9) |
Gene: Avin_43290: Malate synthase G (EC 2.3.3.9) |
Malate synthase G (EC 2.3.3.9) |
| CRON 2. | |||||||||
| glcC |
*
Pseudomonas aeruginosa PAO1 Site: position = -31 score = 6.17042 sequence = AACTGGTCCTACCAGCG Site: position = -118 score = 6.36778 sequence = AACTGGTCCTACCAGTA Gene: PA5356: Glycolate utilization operon transcriptional activator GlcC |
|
*
Pseudomonas putida KT2440 Site: position = -77 score = 6.08116 sequence = GACTGGTCCTACCAGTT Site: position = -2 score = 5.84457 sequence = AAGTGGTCCTACCAGCA Gene: PP3744: Glycolate utilization operon transcriptional activator GlcC |
|
*
Pseudomonas fluorescens Pf-5 Site: position = -133 score = 4.03568 sequence = CAGTGGTCGAACCACTT Site: position = -26 score = 5.46557 sequence = GGCTGGTCATACCAGTG Gene: PFL_2270: Glycolate utilization operon transcriptional activator GlcC |
*
Pseudomonas mendocina ymp Site: position = -141 score = 4.68155 sequence = TGCTGGTATGACCAGTT Site: position = -32 score = 5.79702 sequence = AACTGGTACGACCAGTT Gene: Pmen_0204: Glycolate utilization operon transcriptional activator GlcC |
*
Pseudomonas stutzeri A1501 Site: position = -134 score = 6.36778 sequence = AACTGGTCCTACCAGTT Site: position = -27 score = 6.20812 sequence = AACTGGTCCTACCAGCT Gene: PST_0430: Glycolate utilization operon transcriptional activator GlcC |
*
Azotobacter vinelandii AvOP Site: position = -30 score = 4.82327 sequence = TCATGGTCCTACCAGTT Site: position = -128 score = 5.78988 sequence = AGCTGGTCATACCAGTT Gene: Avin_43340: Glycolate utilization operon transcriptional activator GlcC |
Glycolate utilization operon transcriptional activator GlcC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |