Regulog HutC - Sphingomonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Histidine utilization
Effector:	cis-Urocanic acid
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Sphingomonadales
By trascription factor - HutC
By TF family - GntR/Others
By effector - cis-Urocanic acid
By pathway - Histidine utilization

Statistics of regulated genes
Genome	Genes	Operons
Erythrobacter litoralis HTCC2594
Erythrobacter sp. NAP1
Novosphingobium aromaticivorans DSM 12444
Sphingopyxis alaskensis RB2256	9	3
Sphingobium japonicum UT26S
Sphingomonas wittichii RW1	7	2
Zymomonas mobilis subsp. mobilis ZM4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
hutF	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	* Sphingopyxis alaskensis RB2256 Site: position = -31 score = 6.07971 sequence = ATTATGTCTAGACATAAT Gene: Sala_1687: Formiminoglutamic iminohydrolase (EC 3.5.3.13)	Sphingobium japonicum UT26S	* Sphingomonas wittichii RW1 Site: position = -32 score = 5.9343 sequence = ATAATGTATAGACATTAT Gene: Swit_4634: Formiminoglutamic iminohydrolase (EC 3.5.3.13)	Zymomonas mobilis subsp. mobilis ZM4	Formiminoglutamic iminohydrolase (EC 3.5.3.13)
hutC	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_1686: Histidine utilization repressor, GntR family	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_4635: Histidine utilization repressor, GntR family	Zymomonas mobilis subsp. mobilis ZM4	Histidine utilization repressor, GntR family

CRON 2.
hutI	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	* Sphingopyxis alaskensis RB2256 Site: position = -16 score = 6.07971 sequence = ATTATGTCTAGACATAAT Gene: Sala_1688: Imidazolonepropionase (EC 3.5.2.7)	Sphingobium japonicum UT26S	* Sphingomonas wittichii RW1 Site: position = -61 score = 5.9343 sequence = ATAATGTCTATACATTAT Gene: Swit_4633: Imidazolonepropionase (EC 3.5.2.7)	Zymomonas mobilis subsp. mobilis ZM4	Imidazolonepropionase (EC 3.5.2.7)
hutH	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_1689: Histidine ammonia-lyase (EC 4.3.1.3)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_4632: Histidine ammonia-lyase (EC 4.3.1.3)	Zymomonas mobilis subsp. mobilis ZM4	Histidine ammonia-lyase (EC 4.3.1.3)
hutG	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_1690: N-formylglutamate deformylase (EC 3.5.1.68)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_4631: N-formylglutamate deformylase (EC 3.5.1.68)	Zymomonas mobilis subsp. mobilis ZM4	N-formylglutamate deformylase (EC 3.5.1.68)
hutU	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_1691: Urocanate hydratase (EC 4.2.1.49)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_4630: Urocanate hydratase (EC 4.2.1.49)	Zymomonas mobilis subsp. mobilis ZM4	Urocanate hydratase (EC 4.2.1.49)
hutD	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_4629: Conserved hypothetical protein related to histidine degradation	Zymomonas mobilis subsp. mobilis ZM4	Conserved hypothetical protein related to histidine degradation

CRON 3.
omp	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	* Sphingopyxis alaskensis RB2256 Site: position = -61 score = 4.08662 sequence = GACCTGTATATACATTTG Gene: Sala_2411: TonB-dependent receptor	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	TonB-dependent receptor
Caul_2357	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1 Gene: NAP1_07270: Optional hypothetical component of omp transporter	Novosphingobium aromaticivorans DSM 12444	2 Sphingopyxis alaskensis RB2256 Gene: Sala_2410: Optional hypothetical component of omp transporter Gene: Sala_2409: Optional hypothetical component of omp transporter	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Optional hypothetical component of omp transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HutC - Sphingomonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --