Regulog HutC - Sphingomonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Histidine utilization |
| Effector: | cis-Urocanic acid |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - HutC
- By TF family - GntR/Others
- By effector - cis-Urocanic acid
- By pathway - Histidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | ||
| Erythrobacter sp. NAP1 | ||
| Novosphingobium aromaticivorans DSM 12444 | ||
| Sphingopyxis alaskensis RB2256 | 9 | 3 |
| Sphingobium japonicum UT26S | ||
| Sphingomonas wittichii RW1 | 7 | 2 |
| Zymomonas mobilis subsp. mobilis ZM4 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| hutF |
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*
Sphingopyxis alaskensis RB2256 Site: position = -31 score = 6.07971 sequence = ATTATGTCTAGACATAAT Gene: Sala_1687: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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*
Sphingomonas wittichii RW1 Site: position = -32 score = 5.9343 sequence = ATAATGTATAGACATTAT Gene: Swit_4634: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
| hutC |
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Gene: Sala_1686: Histidine utilization repressor, GntR family |
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Gene: Swit_4635: Histidine utilization repressor, GntR family |
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Histidine utilization repressor, GntR family |
| CRON 2. | ||||||||
| hutI |
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*
Sphingopyxis alaskensis RB2256 Site: position = -16 score = 6.07971 sequence = ATTATGTCTAGACATAAT Gene: Sala_1688: Imidazolonepropionase (EC 3.5.2.7) |
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*
Sphingomonas wittichii RW1 Site: position = -61 score = 5.9343 sequence = ATAATGTCTATACATTAT Gene: Swit_4633: Imidazolonepropionase (EC 3.5.2.7) |
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Imidazolonepropionase (EC 3.5.2.7) |
| hutH |
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Gene: Sala_1689: Histidine ammonia-lyase (EC 4.3.1.3) |
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Gene: Swit_4632: Histidine ammonia-lyase (EC 4.3.1.3) |
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Histidine ammonia-lyase (EC 4.3.1.3) |
| hutG |
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Gene: Sala_1690: N-formylglutamate deformylase (EC 3.5.1.68) |
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Gene: Swit_4631: N-formylglutamate deformylase (EC 3.5.1.68) |
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N-formylglutamate deformylase (EC 3.5.1.68) |
| hutU |
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Gene: Sala_1691: Urocanate hydratase (EC 4.2.1.49) |
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Gene: Swit_4630: Urocanate hydratase (EC 4.2.1.49) |
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Urocanate hydratase (EC 4.2.1.49) |
| hutD |
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Gene: Swit_4629: Conserved hypothetical protein related to histidine degradation |
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Conserved hypothetical protein related to histidine degradation |
| CRON 3. | ||||||||
| omp |
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*
Sphingopyxis alaskensis RB2256 Site: position = -61 score = 4.08662 sequence = GACCTGTATATACATTTG Gene: Sala_2411: TonB-dependent receptor |
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TonB-dependent receptor |
| Caul_2357 |
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Gene: NAP1_07270: Optional hypothetical component of omp transporter |
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2
Sphingopyxis alaskensis RB2256 Gene: Sala_2410: Optional hypothetical component of omp transporter Gene: Sala_2409: Optional hypothetical component of omp transporter |
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Optional hypothetical component of omp transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |