Regulog HutC - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Histidine utilization |
| Effector: | cis-Urocanic acid |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - HutC
- By TF family - GntR/Others
- By effector - cis-Urocanic acid
- By pathway - Histidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 5 | 2 |
| Paracoccus denitrificans PD1222 | 12 | 2 |
| Jannaschia sp. CCS1 | ||
| Rhodobacterales bacterium HTCC2654 | ||
| Oceanicola granulosus HTCC2516 | 5 | 2 |
| Loktanella vestfoldensis SKA53 | ||
| Oceanicola batsensis HTCC2597 | ||
| Roseovarius nubinhibens ISM | 5 | 3 |
| Roseovarius sp. 217 | 7 | 4 |
| Sulfitobacter sp. EE-36 | ||
| Silicibacter TM1040 | 6 | 3 |
| Silicibacter pomeroyi DSS-3 | 6 | 2 |
| Roseobacter sp. MED193 | 5 | 2 |
| Hyphomonas neptunium ATCC 15444 | 6 | 2 |
| Oceanicaulis alexandrii HTCC2633 | 5 | 2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| hutC |
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Gene: OG2516_07757: Histidine utilization repressor, GntR family |
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Roseovarius nubinhibens ISM Site: position = -67 score = 4.02333 sequence = TCTATGTGCGTACAAATT Gene: ISM_02745: Histidine utilization repressor, GntR family |
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Silicibacter pomeroyi DSS-3 Site: position = -133 score = 4.59037 sequence = TTTATGTCCAGTCATAAA Site: position = -51 score = 4.02897 sequence = TCGATTTGTATACATAAA Site: position = -49 score = 4.33437 sequence = GATTTGTATACATAAATT Gene: SPO2190: Histidine utilization repressor, GntR family |
Gene: MED193_01690: Histidine utilization repressor, GntR family |
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Histidine utilization repressor, GntR family |
| CRON 2. | ||||||||||||||||
| hutI |
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Rhodobacter sphaeroides 2.4.1 Site: position = -48 score = 4.84514 sequence = ATTATGTGCACACAAATT Gene: RSP_2934: Imidazolonepropionase (EC 3.5.2.7) |
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Paracoccus denitrificans PD1222 Site: position = -73 score = 4.39773 sequence = AATAAGTTTAGACATAGA Site: position = -50 score = 4.39773 sequence = AATAAGTTTAGACATAGA Gene: Pden_0710: Imidazolonepropionase (EC 3.5.2.7) |
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Oceanicola granulosus HTCC2516 Site: position = -56 score = 4.48907 sequence = GTTATGTGCAGACATAAC Gene: OG2516_07747: Imidazolonepropionase (EC 3.5.2.7) |
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Roseovarius nubinhibens ISM Site: position = -86 score = 5.69878 sequence = ATTATGTATGGACATAAT Gene: ISM_05640: Imidazolonepropionase (EC 3.5.2.7) |
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Roseovarius sp. 217 Site: position = -86 score = 6.19847 sequence = AATATGTATAGACATAAT Gene: ROS217_11786: Imidazolonepropionase (EC 3.5.2.7) |
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Silicibacter TM1040 Site: position = -67 score = 5.17492 sequence = CTTATGTATAGACATAAC Gene: TM1040_3004: Imidazolonepropionase (EC 3.5.2.7) |
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Silicibacter pomeroyi DSS-3 Site: position = -48 score = 4.33437 sequence = AATTTATGTATACAAATC Site: position = -46 score = 4.02897 sequence = TTTATGTATACAAATCGA Gene: SPO2191: Imidazolonepropionase (EC 3.5.2.7) |
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Roseobacter sp. MED193 Site: position = -71 score = 5.33833 sequence = TTTATGTCTAGACATATG Gene: MED193_01670: Imidazolonepropionase (EC 3.5.2.7) |
*2
Hyphomonas neptunium ATCC 15444 Gene: HNE_0404: Imidazolonepropionase (EC 3.5.2.7) Site: position = -55 score = 6.19847 sequence = ATTATGTCTATACATATT Gene: HNE_2395: Imidazolonepropionase (EC 3.5.2.7) |
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Oceanicaulis alexandrii HTCC2633 Site: position = 15 score = 6.22479 sequence = AATATGTATAGACATATT Gene: OA2633_11044: Imidazolonepropionase (EC 3.5.2.7) |
Imidazolonepropionase (EC 3.5.2.7) |
| hutH |
Gene: RSP_2935: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: Pden_0711: Histidine ammonia-lyase (EC 4.3.1.3) |
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Gene: OG2516_07742: Histidine ammonia-lyase (EC 4.3.1.3) |
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Gene: ISM_05635: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: ROS217_11781: Histidine ammonia-lyase (EC 4.3.1.3) |
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Gene: TM1040_3005: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: SPO2192: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: MED193_01675: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: HNE_2396: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: OA2633_11049: Histidine ammonia-lyase (EC 4.3.1.3) |
Histidine ammonia-lyase (EC 4.3.1.3) |
| hutG |
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Gene: Pden_0712: N-formylglutamate deformylase (EC 3.5.1.68) |
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Gene: OG2516_07737: N-formylglutamate deformylase (EC 3.5.1.68) |
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Roseovarius sp. 217 Site: position = -52 score = 4.07831 sequence = AATATGCTTAATCATATT Gene: ROS217_15945: N-formylglutamate deformylase (EC 3.5.1.68) |
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Gene: TM1040_3006: N-formylglutamate deformylase (EC 3.5.1.68) |
Gene: SPOA0448: N-formylglutamate deformylase (EC 3.5.1.68) |
Gene: MED193_01680: N-formylglutamate deformylase (EC 3.5.1.68) |
Gene: HNE_2397: N-formylglutamate deformylase (EC 3.5.1.68) |
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N-formylglutamate deformylase (EC 3.5.1.68) |
| COG1804 (CaiB) |
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Gene: Pden_0713: CAIB/BAIF family protein |
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CAIB/BAIF family protein |
| COG1960 (CaiA) |
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Gene: Pden_0714: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| hutU |
Gene: RSP_2936: Urocanate hydratase (EC 4.2.1.49) |
Gene: Pden_0715: Urocanate hydratase (EC 4.2.1.49) |
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Gene: OG2516_07727: Urocanate hydratase (EC 4.2.1.49) |
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Gene: ISM_05630: Urocanate hydratase (EC 4.2.1.49) |
Gene: ROS217_11776: Urocanate hydratase (EC 4.2.1.49) |
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Gene: TM1040_3007: Urocanate hydratase (EC 4.2.1.49) |
Gene: SPO2193: Urocanate hydratase (EC 4.2.1.49) |
Gene: MED193_01685: Urocanate hydratase (EC 4.2.1.49) |
Gene: HNE_2398: Urocanate hydratase (EC 4.2.1.49) |
Gene: OA2633_11054: Urocanate hydratase (EC 4.2.1.49) |
Urocanate hydratase (EC 4.2.1.49) |
| COG834 (HisJ) |
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Gene: Pden_0716: ABC amino acid transporter, periplasmic binding protein |
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ABC amino acid transporter, periplasmic binding protein |
| COG765 (HisM) |
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Gene: Pden_0717: ABC amino acid transporter, permease component |
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ABC amino acid transporter, permease component |
| COG4160 (ArtM) |
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Gene: Pden_0718: ABC amino acid transporter, permease component |
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ABC amino acid transporter, permease component |
| COG1126 (GlnQ) |
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Gene: Pden_0719: ABC amino acid transporter, ATPase component |
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ABC amino acid transporter, ATPase component |
| hutF |
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Rhodobacter sphaeroides 2.4.1 Site: position = -41 score = 4.84514 sequence = AATTTGTGTGCACATAAT Gene: RSP_2933: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Paracoccus denitrificans PD1222 Site: position = -41 score = 4.39773 sequence = TCTATGTCTAAACTTATT Site: position = -64 score = 4.39773 sequence = TCTATGTCTAAACTTATT Gene: Pden_0709: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Oceanicola granulosus HTCC2516 Site: position = -41 score = 4.48907 sequence = GTTATGTCTGCACATAAC Gene: OG2516_07752: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Roseovarius nubinhibens ISM Site: position = -95 score = 5.1679 sequence = ATTATGTCCAGACATAAC Gene: ISM_02740: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Roseovarius sp. 217 Site: position = -42 score = 4.07831 sequence = AATATGATTAAGCATATT Gene: ROS217_15950: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Silicibacter TM1040 Site: position = -26 score = 5.17492 sequence = GTTATGTCTATACATAAG Gene: TM1040_3003: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
Gene: SPO2194: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Roseobacter sp. MED193 Site: position = -30 score = 5.33833 sequence = CATATGTCTAGACATAAA Gene: MED193_01665: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Hyphomonas neptunium ATCC 15444 Site: position = -40 score = 6.19847 sequence = AATATGTATAGACATAAT Gene: HNE_2394: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
| hutG2 |
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Gene: OA2633_11059: Formiminoglutamase (EC 3.5.3.8) |
Formiminoglutamase (EC 3.5.3.8) |
| hutC |
Gene: RSP_2932: Histidine utilization repressor, GntR family |
Gene: Pden_0708: Histidine utilization repressor, GntR family |
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*2
Roseovarius sp. 217 Gene: ROS217_15955: Histidine utilization repressor, GntR family Site: position = -187 score = 6.19847 sequence = ATTATGTCTATACATATT Gene: ROS217_11791: Histidine utilization repressor, GntR family |
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Silicibacter TM1040 Site: position = -119 score = 5.25013 sequence = AATATGTAGGTACATATT Gene: TM1040_3642: Histidine utilization repressor, GntR family |
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Gene: HNE_2393: Histidine utilization repressor, GntR family |
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Oceanicaulis alexandrii HTCC2633 Site: position = -75 score = 6.22479 sequence = AATATGTCTATACATATT Gene: OA2633_11039: Histidine utilization repressor, GntR family |
Histidine utilization repressor, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |