Regulog BirA - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By trascription factor - BirA
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | ||
| Thauera sp. MZ1T | ||
| Dechloromonas aromatica RCB | ||
| Nitrosomonas europaea ATCC 19718 | 5 | 1 |
| Nitrosospira multiformis ATCC 25196 | 6 | 2 |
| Thiobacillus denitrificans | 6 | 2 |
| Chromobacterium violaceum ATCC 12472 | 7 | 2 |
| Neisseria meningitidis MC58 | ||
| Laribacter hongkongensis HLHK9 | 3 | 2 |
| Methylobacillus flagellatus KT | 5 | 1 |
| Methylotenera mobilis JLW8 | 6 | 2 |
| Methylophilales bacterium HTCC2181 | 5 | 1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| bioB |
Gene: ebA1066: Biotin synthase (EC 2.8.1.6) |
Gene: Tmz1t_1536: Biotin synthase (EC 2.8.1.6) |
Gene: Daro_0618: Biotin synthase (EC 2.8.1.6) |
*
Nitrosomonas europaea ATCC 19718 Site: position = -96 score = 7.57847 sequence = CTGTTTAAT-(14)-AATTGACAA Gene: NE2300: Biotin synthase (EC 2.8.1.6) |
*
Nitrosospira multiformis ATCC 25196 Site: position = -164 score = 7.16729 sequence = TAGTTCAAA-(14)-AATTGACAA Gene: Nmul_A1129: Biotin synthase (EC 2.8.1.6) |
*
Thiobacillus denitrificans Site: position = -583 score = 7.58393 sequence = ATGTTCAAT-(15)-ATTTGACAG Gene: Tbd_0319: Biotin synthase (EC 2.8.1.6) |
*
Chromobacterium violaceum ATCC 12472 Site: position = -132 score = 7.97831 sequence = TTGTCAATT-(14)-GTTTGACAG Gene: CV4381: Biotin synthase (EC 2.8.1.6) |
2
Neisseria meningitidis MC58 Gene: NMB1184: Biotin synthase (EC 2.8.1.6) Gene: NMB1146: Biotin synthase (EC 2.8.1.6) |
*
Laribacter hongkongensis HLHK9 Site: position = -900 score = 6.99832 sequence = CTGTTTATA-(14)-GTTTGACAG Gene: LHK_00097: Biotin synthase (EC 2.8.1.6) |
*
Methylobacillus flagellatus KT Site: position = -469 score = 6.72128 sequence = ATGTAAATG-(15)-GCTTGACAA Gene: Mfla_2164: Biotin synthase (EC 2.8.1.6) |
*
Methylotenera mobilis JLW8 Site: position = -118 score = 7.30061 sequence = TTGTTCAAA-(15)-TGTTGACAA Gene: Mmol_0572: Biotin synthase (EC 2.8.1.6) |
*
Methylophilales bacterium HTCC2181 Site: position = -81 score = 7.02877 sequence = TTGTTAAAA-(14)-GCTTAACCA Gene: MB2181_06030: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioF |
Gene: ebA6018: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
|
Gene: Daro_2897: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: NE2299: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Nmul_A1130: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Tbd_0320: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: CV4380: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: NMB0472: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: LHK_00098: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Mfla_2163: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: Mmol_0573: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: MB2181_06025: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| CV4379 |
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Gene: CV4379: Sensory box/GGDEF family protein |
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Sensory box/GGDEF family protein |
| CV3478 |
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Gene: CV4378: Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17) |
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Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17) |
| bioH |
Gene: ebA6017: Biotin synthesis protein bioH |
Gene: Tmz1t_1979: Biotin synthesis protein bioH |
Gene: Daro_2898: Biotin synthesis protein bioH |
Gene: NE2298: Biotin synthesis protein bioH |
Gene: Nmul_A1131: Biotin synthesis protein bioH |
Gene: Tbd_0321: Biotin synthesis protein bioH |
Gene: CV4377: Biotin synthesis protein bioH |
Gene: NMB0270: Biotin synthesis protein bioH |
Gene: LHK_03115: Biotin synthesis protein bioH |
Gene: Mfla_2162: Biotin synthesis protein bioH |
Gene: Mmol_0574: Biotin synthesis protein bioH |
Gene: MB2181_06020: Biotin synthesis protein bioH |
Biotin synthesis protein bioH |
| bioC |
Gene: ebA6013: Biotin synthesis protein bioC |
|
Gene: Daro_2899: Biotin synthesis protein bioC |
Gene: NE2297: Biotin synthesis protein bioC |
Gene: Nmul_A1132: Biotin synthesis protein bioC |
Gene: Tbd_0322: Biotin synthesis protein bioC |
Gene: CV4376: Biotin synthesis protein bioC |
Gene: NMB0474: Biotin synthesis protein bioC |
Gene: LHK_03114: Biotin synthesis protein bioC |
Gene: Mfla_2161: Biotin synthesis protein bioC |
Gene: Mmol_0575: Biotin synthesis protein bioC |
Gene: MB2181_06015: Biotin synthesis protein bioC |
Biotin synthesis protein bioC |
| bioD |
Gene: ebA6011: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: Daro_2900: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: NE2296: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Nmul_A1133: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Tbd_0323: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: CV0598: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: LHK_00168: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Mfla_2160: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: Mmol_0576: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: MB2181_06010: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
| CRON 2. | |||||||||||||
| COG1040 |
Gene: ebA1065: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
Gene: Tmz1t_1537: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
Gene: Daro_0617: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
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*
Nitrosospira multiformis ATCC 25196 Site: position = 3 score = 7.16729 sequence = TTGTCAATT-(14)-TTTGAACTA Gene: Nmul_A1128: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
*
Thiobacillus denitrificans Site: position = -25 score = 7.58393 sequence = CTGTCAAAT-(15)-ATTGAACAT Gene: Tbd_0317: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
*
Chromobacterium violaceum ATCC 12472 Site: position = -39 score = 7.97831 sequence = CTGTCAAAC-(14)-AATTGACAA Gene: CV4382: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
Gene: NMB0269: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
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Laribacter hongkongensis HLHK9 Site: position = 12 score = 6.99832 sequence = CTGTCAAAC-(14)-TATAAACAG Gene: LHK_00099: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
Gene: Mfla_2181: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
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Methylotenera mobilis JLW8 Site: position = 17 score = 7.30061 sequence = TTGTCAACA-(15)-TTTGAACAA Gene: Mmol_0571: Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
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Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |