Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YdfD/YisV - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode: repressor (activator)
Biological process: Metabolite transport
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 4 4
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 4 4
Bacillus halodurans C-125 2 2
Bacillus clausii KSM-K16 2 2
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yisU
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -39
score = 5.9641
sequence = TGGCTGGTTCCTAACCCAACCAAATGGCTGG

Gene: BSU10870: Hypothetical efflux transporter, LysE family
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_2599: Hypothetical efflux transporter, LysE family
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -94
score = 6.30643
sequence = TGGTTGGTAACCTCCCCAACCATATGGATGG

Gene: BC1986: Hypothetical efflux transporter, LysE family
*
Bacillus halodurans C-125

Site:
position = -90
score = 5.7916
sequence = TGGTTGGCCTCAAGCTAGGCGAACTGGATGA

Gene: BH0431: Hypothetical efflux transporter, LysE family
*
Bacillus clausii KSM-K16

Site:
position = -88
score = 6.86067
sequence = TGGTTGGGTCTTTTCCCAGCCAATTGGTGGT

Gene: ABC1202: Hypothetical efflux transporter, LysE family
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -97
score = 6.41978
sequence = TGGTTGGTATGCGGGCCAACCATTTGGATGG

Gene: Pjdr2_2788: Hypothetical efflux transporter, LysE family
Hypothetical efflux transporter, LysE family
 
CRON 2.
ydfC
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -108
score = 6.95777
sequence = TGGTTGGGTCAAAATCTATTGAACTGGTTGA

Gene: BSU05360: Permease of the drug/metabolite transporter (DMT) superfamily
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -116
score = 6.56481
sequence = TGGTTGGTTTTTCCGATAAATAACTGGTTGA

Gene: BC2681: Permease of the drug/metabolite transporter (DMT) superfamily
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC0276: Permease of the drug/metabolite transporter (DMT) superfamily
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Permease of the drug/metabolite transporter (DMT) superfamily
 
CRON 3.
ydfD
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -55
score = -0.562058
sequence = TCAACCAGTTCAATAGATTTTGACCCAACCA

Gene: BSU05370: Transcriptional regulator, GntR (GabR/MocR) family
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -67
score = 0.303209
sequence = TCAACCAGTTATTTATCGGAAAAACCAACCA

Gene: BC2680: Transcriptional regulator, GntR (GabR/MocR) family
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional regulator, GntR (GabR/MocR) family
 
CRON 4.
yisV
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -58
score = -2.21839
sequence = CCAGCCATTTGGTTGGGTTAGGAACCAGCCA

Gene: BSU10880: Transcriptional regulator, GntR (GabR/MocR) family
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -52
score = -1.29709
sequence = CCATCCATATGGTTGGGGAGGTTACCAACCA

Gene: BC1987: Transcriptional regulator, GntR (GabR/MocR) family
*
Bacillus halodurans C-125

Site:
position = -56
score = -0.93057
sequence = TCATCCAGTTCGCCTAGCTTGAGGCCAACCA

Gene: BH0432: Transcriptional regulator, GntR (GabR/MocR) family
*
Bacillus clausii KSM-K16

Site:
position = -50
score = -1.88343
sequence = ACCACCAATTGGCTGGGAAAAGACCCAACCA

Gene: ABC1201: Transcriptional regulator, GntR (GabR/MocR) family
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -60
score = -1.33071
sequence = CCATCCAAATGGTTGGCCCGCATACCAACCA

Gene: Pjdr2_2789: Transcriptional regulator, GntR (GabR/MocR) family
Transcriptional regulator, GntR (GabR/MocR) family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise