Regulog FadR - Bacillales

Member of regulog collections
- By taxonomy - Bacillales
- By TF family - TetR
- By effector - Palmitoyl-CoA
- By effector - Oleoyl-CoA
- By pathway - Fatty acid degradation
Genome | Genes | Operons |
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Bacillus subtilis subsp. subtilis str. 168 | 12 | 5 |
Bacillus amyloliquefaciens FZB42 | 10 | 5 |
Bacillus pumilus SAFR-032 | 14 | 5 |
Bacillus licheniformis DSM 13 | 14 | 5 |
Anoxybacillus flavithermus WK1 | 12 | 5 |
Geobacillus kaustophilus HTA426 | 14 | 6 |
Bacillus cereus ATCC 14579 | 11 | 4 |
Bacillus halodurans C-125 | 13 | 4 |
Bacillus clausii KSM-K16 | 12 | 4 |
Oceanobacillus iheyensis HTE831 | 10 | 5 |
Paenibacillus sp. JDR-2 |
Genes | Function | |||||||||||
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CRON 1. | ||||||||||||
fadN |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = 39 score = 6.74862 sequence = ATGAATGACTATTCATTCAA Gene: BSU32840: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
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Bacillus amyloliquefaciens FZB42 Site: position = -39 score = 6.74862 sequence = ATGAATGACTATTCATTCAA Gene: RBAM_029920: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
*
Bacillus pumilus SAFR-032 Site: position = -39 score = 6.54445 sequence = ATGAATGACTGTTCATTCAA Gene: BPUM_2942: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
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Bacillus licheniformis DSM 13 Site: position = -39 score = 6.81767 sequence = ATGAATGAGTATTCATTCAA Gene: BLi03466: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
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Geobacillus kaustophilus HTA426 Site: position = -40 score = 6.54445 sequence = ATGAATGACCATTCATTCAA Gene: GK3008: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
*
Bacillus cereus ATCC 14579 Site: position = -38 score = 6.50212 sequence = TTGAATGAGCATTCATTCAA Gene: BC5004: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
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Bacillus halodurans C-125 Site: position = -36 score = 6.45033 sequence = ATGAATGAGTATTCATTCGT Gene: BH3488: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
*
Bacillus clausii KSM-K16 Site: position = -46 score = 5.94346 sequence = ATGAATGAGTGTTCATTCGG Gene: ABC2990: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
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Oceanobacillus iheyensis HTE831 Site: position = -41 score = 6.6135 sequence = ATGAATGAGCATTCATTCAA Gene: OB2395: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Pjdr2_0489: Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
fadA |
Gene: BSU32830: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: RBAM_029910: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: BPUM_2941: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: BLi03465: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Aflv_2481: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: GK3007: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: BC5003: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: BH3487: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: ABC2989: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: OB2394: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Pjdr2_0490: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
fadE |
Gene: BSU32820: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: RBAM_029900: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: BPUM_2940: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: BLi03464: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Aflv_2480: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: GK3006: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: BC5002: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: BH3486: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: ABC2988: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: OB2393: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Pjdr2_0491: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
CRON 2. | ||||||||||||
fadF |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -98 score = 6.34699 sequence = TTGACTGAACACTCATTCAT Gene: BSU37180: Fe-S oxidoreductase |
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Bacillus amyloliquefaciens FZB42 Site: position = -82 score = 6.34699 sequence = TTGACTGAACACTCATTCAT Gene: RBAM_034330: Fe-S oxidoreductase |
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Bacillus pumilus SAFR-032 Site: position = -88 score = 6.55116 sequence = TTGACTGAATACTCATTCAT Gene: BPUM_3374: Fe-S oxidoreductase |
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Bacillus licheniformis DSM 13 Site: position = -82 score = 6.34699 sequence = TTGACTGAACACTCATTCAT Gene: BLi03969: Fe-S oxidoreductase |
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Anoxybacillus flavithermus WK1 Site: position = -85 score = 6.34699 sequence = TTGACTGAATGCTCATTCAT Gene: Aflv_2740: Fe-S oxidoreductase |
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Geobacillus kaustophilus HTA426 Site: position = -106 score = 6.34699 sequence = TTGACTGAATGCTCATTCAT Gene: GK3398: Fe-S oxidoreductase |
*
Bacillus cereus ATCC 14579 Site: position = -115 score = 5.88965 sequence = TTGACTGAATGCTCACTCAT Gene: BC5345: Fe-S oxidoreductase |
*
Bacillus halodurans C-125 Site: position = -123 score = 6.47171 sequence = ATGAGTGAATACTCATTCAT Gene: BH3802: Fe-S oxidoreductase |
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Bacillus clausii KSM-K16 Site: position = -109 score = 6.15569 sequence = CTGACTGAATGCTCATTCAT Gene: ABC3892: Fe-S oxidoreductase |
*
Oceanobacillus iheyensis HTE831 Site: position = -106 score = 6.29833 sequence = TTGACTGAATGATCATTCAT Gene: OB3014: Fe-S oxidoreductase |
Gene: Pjdr2_0488: Fe-S oxidoreductase |
Fe-S oxidoreductase |
mmgA |
Gene: BSU24170: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: RBAM_022450: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: BPUM_3373: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: BLi03968: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Aflv_2739: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: GK3397: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: BC5344: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: BH3801: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: ABC3891: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: OB3013: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Pjdr2_2766: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
mmgB |
Gene: BSU24160: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: RBAM_022440: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: BPUM_3372: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: BLi03967: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: Aflv_2738: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: GK3395: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: BC5343: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: BH3800: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: ABC3890: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: OB3012: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: Pjdr2_2767: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
mmgC |
Gene: BSU24150: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: RBAM_022430: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: BPUM_3371: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: BLi03966: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Aflv_2737: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: GK3394: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: BC5342: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: BH3799: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: ABC3889: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: OB3011: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Pjdr2_2768: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
acdA |
Gene: BSU37170: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
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Gene: BPUM_3370: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: BLi03965: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: Aflv_2736: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: GK3393: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: BC5341: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
Gene: BH3798: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
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Gene: OB3010: Acyl-CoA dehydrogenase (EC 1.3.99.-) |
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Acyl-CoA dehydrogenase (EC 1.3.99.-) |
GK3396 |
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Gene: GK3396: Hypothetical protein |
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Hypothetical protein |
CRON 3. | ||||||||||||
fadR |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -44 score = 6.86 sequence = ATGAATGAATAGTCATTCAT Gene: BSU28550: Transcriptional regulator of fatty acids degradation, TetR family |
*
Bacillus amyloliquefaciens FZB42 Site: position = -38 score = 6.86 sequence = ATGAATGAATAGTCATTCAT Gene: RBAM_025610: Transcriptional regulator of fatty acids degradation, TetR family |
*
Bacillus pumilus SAFR-032 Site: position = -41 score = 6.81767 sequence = ATGAATGAATACTCATTCAA Gene: BPUM_2512: Transcriptional regulator of fatty acids degradation, TetR family |
*
Bacillus licheniformis DSM 13 Site: position = -43 score = 6.92906 sequence = ATGAATGAGTATTCATTCAT Gene: BLi03002: Transcriptional regulator of fatty acids degradation, TetR family |
*
Anoxybacillus flavithermus WK1 Site: position = -44 score = 6.8804 sequence = ATGAATGATTATTCATTCAT Gene: Aflv_0565: Transcriptional regulator of fatty acids degradation, TetR family |
*
Geobacillus kaustophilus HTA426 Site: position = -60 score = 6.12193 sequence = ATGAATGATGGTTCATTCAT Gene: GK2689: Transcriptional regulator of fatty acids degradation, TetR family |
*
Bacillus cereus ATCC 14579 Site: position = -45 score = 6.55731 sequence = ATGAATGACTATTCATTCAG Gene: BC4525: Transcriptional regulator of fatty acids degradation, TetR family |
*
Bacillus halodurans C-125 Site: position = -38 score = 6.92906 sequence = ATGAATGAATACTCATTCAT Gene: BH3102: Transcriptional regulator of fatty acids degradation, TetR family |
*
Bacillus clausii KSM-K16 Site: position = -45 score = 6.84419 sequence = ATGAATGAACATTCATTCAT Gene: ABC2672: Transcriptional regulator of fatty acids degradation, TetR family |
*
Oceanobacillus iheyensis HTE831 Site: position = -50 score = 5.91619 sequence = ATGAATGATCATTCACTCAG Gene: OB2121: Transcriptional regulator of fatty acids degradation, TetR family |
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Transcriptional regulator of fatty acids degradation, TetR family |
fadB |
Gene: BSU28540: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: RBAM_025600: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: BPUM_2511: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: BLi03001: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Aflv_0566: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: GK2688: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: BC4524: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: BH3101: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: ABC2671: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: OB2120: Enoyl-CoA hydratase (EC 4.2.1.17) |
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Enoyl-CoA hydratase (EC 4.2.1.17) |
etfB |
Gene: BSU28530: Electron transfer flavoprotein, beta subunit |
Gene: RBAM_025590: Electron transfer flavoprotein, beta subunit |
Gene: BPUM_2510: Electron transfer flavoprotein, beta subunit |
Gene: BLi03000: Electron transfer flavoprotein, beta subunit |
Gene: Aflv_0567: Electron transfer flavoprotein, beta subunit |
Gene: GK2687: Electron transfer flavoprotein, beta subunit |
Gene: BC4523: Electron transfer flavoprotein, beta subunit |
Gene: BH3100: Electron transfer flavoprotein, beta subunit |
Gene: ABC2670: Electron transfer flavoprotein, beta subunit |
Gene: OB2119: Electron transfer flavoprotein, beta subunit |
Gene: Pjdr2_0487: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
etfA |
Gene: BSU28520: Electron transfer flavoprotein, alpha subunit |
Gene: RBAM_025580: Electron transfer flavoprotein, alpha subunit |
Gene: BPUM_2509: Electron transfer flavoprotein, alpha subunit |
Gene: BLi02999: Electron transfer flavoprotein, alpha subunit |
Gene: Aflv_0568: Electron transfer flavoprotein, alpha subunit |
Gene: GK2686: Electron transfer flavoprotein, alpha subunit |
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Gene: BH3099: Electron transfer flavoprotein, alpha subunit |
Gene: ABC2669: Electron transfer flavoprotein, alpha subunit |
Gene: OB2118: Electron transfer flavoprotein, alpha subunit |
Gene: Pjdr2_0486: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
CRON 4. | ||||||||||||
lcfB |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -35 score = 6.51349 sequence = ATGAATGACTATTCATTCAC Gene: BSU10270: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -44 score = 6.86 sequence = ATGAATGACTATTCATTCAT Gene: RBAM_010470: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Bacillus pumilus SAFR-032 Site: position = -44 score = 6.46666 sequence = ATGAATGGTTATTCATTCAT Gene: BPUM_0969: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Bacillus licheniformis DSM 13 Site: position = -39 score = 6.26249 sequence = ATGAATGGTCATTCATTCAT Gene: BLi01103: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Anoxybacillus flavithermus WK1 Site: position = -41 score = 6.3261 sequence = ATGAATGATGATTCATTCAT Gene: Aflv_2253: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Geobacillus kaustophilus HTA426 Site: position = -38 score = 6.26249 sequence = ATGAATGGTCATTCATTCAT Gene: GK0668: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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*
Oceanobacillus iheyensis HTE831 Site: position = -41 score = 6.92906 sequence = ATGAATGAGTATTCATTCAT Gene: OB1176: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
CRON 5. | ||||||||||||
Aflv_1606 |
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*
Anoxybacillus flavithermus WK1 Site: position = -53 score = 6.46483 sequence = ATGAATGAATATTCATTCTT Gene: Aflv_1606: hypothetical Zn-dependent hydrolase |
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Geobacillus kaustophilus HTA426 Site: position = -76 score = 5.50587 sequence = AAAAATGAATGATCATTCAT Gene: GK1401: hypothetical Zn-dependent hydrolase |
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*
Bacillus clausii KSM-K16 Site: position = -38 score = 6.41459 sequence = GTGAATGATTACTCATTCAT Gene: ABC0525: hypothetical Zn-dependent hydrolase |
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Oceanobacillus iheyensis HTE831 Site: position = -73 score = 6.61389 sequence = ATGACTGATTATTCATTCAT Gene: OB0204: hypothetical Zn-dependent hydrolase |
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hypothetical Zn-dependent hydrolase |
CRON 6. | ||||||||||||
ykuF |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -36 score = 6.4225 sequence = TTGAATGAATAATCATTCAC Gene: BSU14060: 2,4-dienoyl-CoA reductase, mitochondrial precursor (EC 1.3.1.34) |
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Bacillus amyloliquefaciens FZB42 Site: position = -40 score = 6.76901 sequence = ATGAATGATTATTCATTCAA Gene: RBAM_013850: 2,4-dienoyl-CoA reductase, mitochondrial precursor (EC 1.3.1.34) |
*
Bacillus pumilus SAFR-032 Site: position = -40 score = 6.74862 sequence = ATGAATGAATAGTCATTCAA Gene: BPUM_1303: short chain dehydrogenase |
*
Bacillus licheniformis DSM 13 Site: position = -36 score = 6.81767 sequence = TTGAATGAATACTCATTCAT Gene: BLi01620: Oxidoreductase, short chain dehydrogenase/reductase family |
*
Anoxybacillus flavithermus WK1 Site: position = -37 score = 6.46666 sequence = ATGAATGAATAACCATTCAT Gene: Aflv_1909: short chain dehydrogenase |
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Geobacillus kaustophilus HTA426 Site: position = -34 score = 6.49459 sequence = ATGAATGAGTAATCAGTCAT Gene: GK1044: Oxidoreductase, short-chain dehydrogenase/reductase family |
*
Bacillus cereus ATCC 14579 Site: position = -29 score = 5.17853 sequence = ATGAATGTGTATTCATTTTT Gene: BC3990: 2,4-dienoyl-CoA reductase [NADPH] |
*
Bacillus halodurans C-125 Site: position = -38 score = 6.82559 sequence = TTGAATGAATATTCATTCAA Gene: BH2144: 2,4-dienoyl-CoA reductase (NADPH) |
Gene: ABC1993: Oxidoreductase, short-chain dehydrogenase/reductase family |
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2,4-dienoyl-CoA reductase, mitochondrial precursor (EC 1.3.1.34) |
fadG |
Gene: BSU14071: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |