Regulog RocR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Arginine degradation; Ornithine degradation |
| Effector: | Ornithine; L-citrulline |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - Fis
- By effector - Ornithine
- By effector - L-citrulline
- By pathway - Arginine degradation
- By pathway - Ornithine degradation
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 7 | 3 |
| Bacillus amyloliquefaciens FZB42 | 7 | 3 |
| Bacillus pumilus SAFR-032 | 3 | 2 |
| Bacillus licheniformis DSM 13 | 4 | 2 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | 5 | 2 |
| Bacillus cereus ATCC 14579 | 1 | 1 |
| Bacillus halodurans C-125 | 5 | 2 |
| Bacillus clausii KSM-K16 | 2 | 2 |
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| rocC |
Gene: BSU37760: Arginine/ornithine permease |
Gene: RBAM_034960: Arginine/ornithine permease |
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Geobacillus kaustophilus HTA426 Site: position = -93 score = 8.05777 sequence = TGAAAAAT-(1)-ATTTTGCA Site: position = -168 score = 7.69112 sequence = TGAAAAAA-(1)-TTTTTGCT Gene: GK0186: Arginine/ornithine permease |
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Arginine/ornithine permease |
| rocA |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -213 score = 8.57841 sequence = CGCAAAAT-(1)-ATTTTGCA Site: position = -169 score = 7.97041 sequence = CGCAAAAT-(1)-AATTTGCG Gene: BSU37780: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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Bacillus amyloliquefaciens FZB42 Site: position = -199 score = 7.57413 sequence = CGCAAAGA-(1)-ATTTTGCA Site: position = -165 score = 7.8404 sequence = CGCAAAAT-(1)-TCTTTGCG Gene: RBAM_034980: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: BPUM_0301: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: BLi00374: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: Aflv_0249: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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Geobacillus kaustophilus HTA426 Site: position = -37 score = 7.68317 sequence = CGAAAAAT-(1)-TTTTTGCC Gene: GK0187: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: BC0344: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: BH3940: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: ABC0965: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: OB1349: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
| rocD |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -175 score = 7.89341 sequence = TGCAAAAG-(1)-ATTTTGCA Gene: BSU40340: Ornithine aminotransferase (EC 2.6.1.13) |
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Bacillus amyloliquefaciens FZB42 Site: position = -177 score = 8.71467 sequence = CGCAAAAA-(1)-ATTTTGCG Gene: RBAM_037250: Ornithine aminotransferase (EC 2.6.1.13) |
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Bacillus pumilus SAFR-032 Site: position = -137 score = 7.20123 sequence = TGCAAAGA-(1)-ATTTTGCT Gene: BPUM_3060: Ornithine aminotransferase (EC 2.6.1.13) |
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Bacillus licheniformis DSM 13 Site: position = -142 score = 8.71467 sequence = CGCAAAAT-(0)-TTTTTGCG Gene: BLi00422: Ornithine aminotransferase (EC 2.6.1.13) |
Gene: Aflv_2206: Ornithine aminotransferase (EC 2.6.1.13) |
Gene: GK0188: Ornithine aminotransferase (EC 2.6.1.13) |
Gene: BC1149: Ornithine aminotransferase (EC 2.6.1.13) |
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Bacillus halodurans C-125 Site: position = -172 score = 7.96304 sequence = AGAAAAAT-(1)-ATTTTTCG Site: position = -215 score = 7.31976 sequence = TGCAAATT-(1)-TTTTTTCG Gene: BH3943: Ornithine aminotransferase (EC 2.6.1.13) |
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Bacillus clausii KSM-K16 Site: position = -173 score = 8.4603 sequence = CGCAAAAA-(1)-ATTTTTCG Site: position = -140 score = 7.69112 sequence = TGCAAAAA-(1)-TTTTTTCT Gene: ABC0017: Ornithine aminotransferase (EC 2.6.1.13) |
Gene: OB2287: Ornithine aminotransferase (EC 2.6.1.13) |
Gene: Pjdr2_3902: Ornithine aminotransferase (EC 2.6.1.13) |
Ornithine aminotransferase (EC 2.6.1.13) |
| rocG |
Gene: BSU37790: NAD-specific glutamate dehydrogenase (EC 1.4.1.2) |
Gene: RBAM_034990: NAD-specific glutamate dehydrogenase (EC 1.4.1.2) |
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Gene: GK0189: NAD-specific glutamate dehydrogenase (EC 1.4.1.2) |
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Gene: BH3942: NAD-specific glutamate dehydrogenase (EC 1.4.1.2) |
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NAD-specific glutamate dehydrogenase (EC 1.4.1.2) |
| BH3941 |
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Gene: BH3941: Hypothetical protein |
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Hypothetical protein |
| rocE |
Gene: BSU40330: Arginine/ornithine/gamma-aminobutyrate permease |
Gene: RBAM_037240: Arginine/ornithine/gamma-aminobutyrate permease |
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Gene: BLi00423: Arginine/ornithine/gamma-aminobutyrate permease |
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Gene: BC0643: Arginine/ornithine/gamma-aminobutyrate permease |
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Arginine/ornithine/gamma-aminobutyrate permease |
| rocF |
Gene: BSU40320: Arginase (EC 3.5.3.1) |
Gene: RBAM_037230: Arginase (EC 3.5.3.1) |
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Gene: BLi00424: Arginase (EC 3.5.3.1) |
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Gene: BC0185: Arginase (EC 3.5.3.1) |
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Arginase (EC 3.5.3.1) |
| rocB |
Gene: BSU37770: Putative N-deacylase involved in arginine and ornithine utilization |
Gene: RBAM_034970: Putative N-deacylase involved in arginine and ornithine utilization |
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Putative N-deacylase involved in arginine and ornithine utilization |
| rocC |
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Gene: BPUM_3059: Arginine/ornithine permease |
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Arginine/ornithine permease |
| CRON 2. | ||||||||||||
| rocR |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -82 score = 7.89341 sequence = TGCAAAAT-(1)-CTTTTGCA Gene: BSU40350: Transcriptional activator of arginine utilization, Fis family |
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Bacillus amyloliquefaciens FZB42 Site: position = -59 score = 8.71467 sequence = CGCAAAAT-(1)-TTTTTGCG Gene: RBAM_037260: Transcriptional activator of arginine utilization, Fis family |
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Bacillus pumilus SAFR-032 Site: position = -89 score = 7.20123 sequence = AGCAAAAT-(1)-TCTTTGCA Gene: BPUM_3061: Transcriptional activator of arginine utilization, Fis family |
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Bacillus licheniformis DSM 13 Site: position = -22 score = 8.71467 sequence = CGCAAAAA-(0)-ATTTTGCG Gene: BLi00421: Transcriptional activator of arginine utilization, Fis family |
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Geobacillus kaustophilus HTA426 Site: position = -159 score = 8.05777 sequence = TGCAAAAT-(1)-ATTTTTCA Site: position = -84 score = 7.69112 sequence = AGCAAAAA-(1)-TTTTTTCA Gene: GK0185: Transcriptional activator of arginine utilization, Fis family |
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Bacillus cereus ATCC 14579 Site: position = -87 score = 8.21177 sequence = AGCAAAAA-(1)-TTTTTGCG Gene: BC0473: Transcriptional activator of arginine utilization, Fis family |
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Bacillus halodurans C-125 Site: position = -116 score = 7.96304 sequence = CGAAAAAT-(1)-ATTTTTCT Site: position = -73 score = 7.31976 sequence = CGAAAAAA-(1)-AATTTGCA Gene: BH3944: Transcriptional activator of arginine utilization, Fis family |
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Bacillus clausii KSM-K16 Site: position = -95 score = 7.69112 sequence = AGAAAAAA-(1)-TTTTTGCA Site: position = -62 score = 8.4603 sequence = CGAAAAAT-(1)-TTTTTGCG Gene: ABC0016: Transcriptional activator of arginine utilization, Fis family |
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Transcriptional activator of arginine utilization, Fis family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |