Regulog PhhR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator (repressor) |
| Biological process: | Aromatic amino acid metabolism |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - TyrR
- By taxonomy - Pseudomonadaceae
- By TF family - TyrR
- By effector - Tyrosine
- By effector - Phenylalanine
- By pathway - Aromatic amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | 5 | 3 |
| Pseudomonas entomophila L48 | 4 | 2 |
| Pseudomonas fluorescens Pf-5 | 4 | 2 |
| Pseudomonas mendocina ymp | 9 | 3 |
| Pseudomonas putida KT2440 | 3 | 2 |
| Pseudomonas stutzeri A1501 | 9 | 3 |
| Pseudomonas syringae pv. tomato str. DC3000 | 3 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| phhR |
|
*
Pseudomonas aeruginosa PAO1 Site: position = -159 score = 5.46702 sequence = TCGTAAAGTTTTCCTTACGA Site: position = -86 score = 5.21705 sequence = CTGTCACATATTCTTGACGG Gene: PA0873: Phenylalanine degradation transcriptional activator, TyrR family |
*
Pseudomonas entomophila L48 Site: position = -138 score = 5.41991 sequence = TTGTAACGATAATTTTACAA Site: position = -65 score = 5.21598 sequence = TTGTCAGCTTATCTTTACGA Gene: PSEEN3891: Phenylalanine degradation transcriptional activator, TyrR family |
*
Pseudomonas fluorescens Pf-5 Site: position = -194 score = 5.54307 sequence = TTGTAAAGTAAACGTTACGA Site: position = -120 score = 5.28101 sequence = CTGTCACATAATCTTGACGA Gene: PFL_1612: Phenylalanine degradation transcriptional activator, TyrR family |
*
Pseudomonas mendocina ymp Site: position = -80 score = 5.21705 sequence = CTGTCACATATTCTTGACGG Gene: Pmen_3111: Phenylalanine degradation transcriptional activator, TyrR family |
*
Pseudomonas putida KT2440 Site: position = -138 score = 5.4012 sequence = TCGTAACGATAATTTTACAA Site: position = -65 score = 5.21598 sequence = TTGTCAGCTTATCTTTACGA Gene: PP4489: Phenylalanine degradation transcriptional activator, TyrR family |
*
Pseudomonas stutzeri A1501 Site: position = -136 score = 4.89218 sequence = CTGTAAGAAATACATGACAG Site: position = -74 score = 5.36784 sequence = CTGTCAAATAATCTTGACGA Gene: PST_3561: Phenylalanine degradation transcriptional activator, TyrR family |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -88 score = 4.87066 sequence = GTGTAACGTATTGTTGACGG Site: position = -161 score = 5.50565 sequence = TCGTAACGAAAACTTTACGA Gene: PSPTO1823: Phenylalanine degradation transcriptional activator, TyrR family |
Phenylalanine degradation transcriptional activator, TyrR family |
| CRON 2. | |||||||||
| hpd |
Gene: Avin_34750: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
*
Pseudomonas aeruginosa PAO1 Site: position = -161 score = 4.40565 sequence = GCGTAAGGAATAGTTGCCAG Site: position = -212 score = 5.56592 sequence = CTGTAAAGATAACTTTACGA Gene: PA0865: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
|
|
*
Pseudomonas mendocina ymp Site: position = -144 score = 4.86282 sequence = CTGTAAGAAAAACTTGCCAA Site: position = -195 score = 4.66598 sequence = CTGGCAAGAAAACCTTACGC Gene: Pmen_1696: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
|
*
Pseudomonas stutzeri A1501 Site: position = -143 score = 5.24164 sequence = CTGTAAGGAAAACCTGACAG Site: position = -203 score = 4.75455 sequence = CTGTCAGCTTTTCGTTACGC Gene: PST_0869: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
|
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
| hmgA |
|
|
|
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Gene: Pmen_1697: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
|
Gene: PST_0870: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
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Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
| hmgC |
|
|
|
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Gene: Pmen_1698: Fumarylacetoacetase (EC 3.7.1.2) |
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Gene: PST_0871: Fumarylacetoacetase (EC 3.7.1.2) |
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Fumarylacetoacetase (EC 3.7.1.2) |
| hmgB |
|
|
|
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Gene: Pmen_1699: Maleylacetoacetate isomerase (EC 5.2.1.2) |
|
Gene: PST_0872: Maleylacetoacetate isomerase (EC 5.2.1.2) |
|
Maleylacetoacetate isomerase (EC 5.2.1.2) |
| COG0733 |
|
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|
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Gene: Pmen_1700: Predicted 4-Hydroxyphenylpyruvate transporter, SNF family |
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Gene: PST_0873: Predicted 4-Hydroxyphenylpyruvate transporter, SNF family |
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Predicted 4-Hydroxyphenylpyruvate transporter, SNF family |
| CRON 3. | |||||||||
| phhA |
Gene: Avin_34650: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Pseudomonas aeruginosa PAO1 Site: position = -217 score = 5.21705 sequence = CCGTCAAGAATATGTGACAG Site: position = -144 score = 5.46702 sequence = TCGTAAGGAAAACTTTACGA Gene: PA0872: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Pseudomonas entomophila L48 Site: position = -210 score = 5.21598 sequence = TCGTAAAGATAAGCTGACAA Site: position = -137 score = 5.41991 sequence = TTGTAAAATTATCGTTACAA Gene: PSEEN3892: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Pseudomonas fluorescens Pf-5 Site: position = -207 score = 5.28101 sequence = TCGTCAAGATTATGTGACAG Site: position = -133 score = 5.54307 sequence = TCGTAACGTTTACTTTACAA Gene: PFL_1611: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Pseudomonas mendocina ymp Site: position = -193 score = 5.21705 sequence = CCGTCAAGAATATGTGACAG Gene: Pmen_3112: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Pseudomonas putida KT2440 Site: position = -212 score = 5.21598 sequence = TCGTAAAGATAAGCTGACAA Site: position = -139 score = 5.4012 sequence = TTGTAAAATTATCGTTACGA Gene: PP4490: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Pseudomonas stutzeri A1501 Site: position = -191 score = 5.36784 sequence = TCGTCAAGATTATTTGACAG Site: position = -129 score = 4.89218 sequence = CTGTCATGTATTTCTTACAG Gene: PST_3562: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -206 score = 4.87066 sequence = CCGTCAACAATACGTTACAC Site: position = -133 score = 5.50565 sequence = TCGTAAAGTTTTCGTTACGA Gene: PSPTO1822: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
| phhB |
Gene: Avin_34660: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: PA0871: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: PSEEN3893: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: PFL_1610: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Pmen_3113: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: PP4491: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: PST_3563: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: PSPTO1821: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
| phhC |
|
Gene: PA0870: Aromatic-amino-acid aminotransferase (EC 2.6.1.57) |
Gene: PSEEN3894: Aromatic-amino-acid aminotransferase (EC 2.6.1.57) |
Gene: PFL_1609: Aromatic-amino-acid aminotransferase (EC 2.6.1.57) |
Gene: Pmen_3114: Aromatic-amino-acid aminotransferase (EC 2.6.1.57) |
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Gene: PST_3564: Aromatic-amino-acid aminotransferase (EC 2.6.1.57) |
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Aromatic-amino-acid aminotransferase (EC 2.6.1.57) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |