Regulog NikR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - NikR
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 6 | 1 |
| Salmonella typhimurium LT2 | 6 | 2 |
| Citrobacter koseri ATCC BAA-895 | 6 | 1 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 6 | 1 |
| Enterobacter sp. 638 | 6 | 1 |
| Erwinia amylovora ATCC 49946 | ||
| Yersinia pestis KIM | ||
| Serratia proteamaculans 568 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ||
| Edwardsiella tarda EIB202 | 11 | 3 |
| Proteus mirabilis HI4320 | ||
| Photorhabdus luminescens subsp. laumondii TTO1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| nikA |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -65 score = 7.99675 sequence = GTATGACGAATACTTAAAATCGTCATAC Gene: b3476: nickel ABC transporter, periplasmic nickel-binding protein |
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Citrobacter koseri ATCC BAA-895 Site: position = -207 score = 8.04442 sequence = GTATGATGAATCTTTAGAATCGTCATAC Gene: CKO_04926: nickel ABC transporter, periplasmic nickel-binding protein |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -52 score = 7.99675 sequence = GTATGATGAATCACTAAAATCGTCATAC Gene: KPN_03850: nickel ABC transporter, periplasmic nickel-binding protein |
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Enterobacter sp. 638 Site: position = -64 score = 7.87692 sequence = GTATGATGAATTATTAGAATCGTCACAC Gene: Ent638_1834: nickel ABC transporter, periplasmic nickel-binding protein |
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Edwardsiella tarda EIB202 Site: position = -59 score = 7.67008 sequence = GTATGCAGAATTTATAAAATCATCATAC Gene: ETAE_1379: nickel ABC transporter, periplasmic nickel-binding protein |
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nickel ABC transporter, periplasmic nickel-binding protein |
| nikB |
Gene: b3477: nickel transporter permease NikB |
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Gene: CKO_04927: nickel transporter permease NikB |
Gene: KPN_03851: nickel transporter permease NikB |
Gene: Ent638_1835: nickel transporter permease NikB |
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Gene: ETAE_1378: nickel transporter permease NikB |
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nickel transporter permease NikB |
| nikC |
Gene: b3478: nickel transporter permease NikC |
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Gene: CKO_04928: nickel transporter permease NikC |
Gene: KPN_03852: nickel transporter permease NikC |
Gene: Ent638_1836: nickel transporter permease NikC |
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Gene: ETAE_1377: nickel transporter permease NikC |
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nickel transporter permease NikC |
| nikD |
Gene: b3479: nickel transporter ATP-binding protein NikD |
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Gene: CKO_04929: nickel transporter ATP-binding protein NikD |
Gene: KPN_03853: nickel transporter ATP-binding protein NikD |
Gene: Ent638_1837: nickel transporter ATP-binding protein NikD |
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Gene: ETAE_1376: nickel transporter ATP-binding protein NikD |
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nickel transporter ATP-binding protein NikD |
| nikE |
Gene: b3480: nickel transporter ATP-binding protein NikE |
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Gene: CKO_04930: nickel transporter ATP-binding protein NikE |
Gene: KPN_03854: nickel transporter ATP-binding protein NikE |
Gene: Ent638_1838: nickel transporter ATP-binding protein NikE |
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Gene: ETAE_1375: nickel transporter ATP-binding protein NikE |
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nickel transporter ATP-binding protein NikE |
| nikR |
Gene: b3481: nickel responsive regulator |
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Gene: CKO_04931: nickel responsive regulator |
Gene: KPN_03855: nickel responsive regulator |
Gene: Ent638_1839: nickel responsive regulator |
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Gene: ETAE_0262: nickel responsive regulator |
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nickel responsive regulator |
| CRON 2. | |||||||||||||
| yntA |
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*
Salmonella typhimurium LT2 Site: position = -101 score = 6.50784 sequence = GTATGATGTTTTTAAAAGATCGTCATAC Gene: STM1255: predicted nickel ABC transporter, substrate-binding protein |
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*
Edwardsiella tarda EIB202 Site: position = -171 score = 5.27379 sequence = GTATGCAGAAGTAAGGAAAAGTGCATAC Gene: ETAE_1580: predicted nickel ABC transporter, substrate-binding protein |
Gene: PMI2516: predicted nickel ABC transporter, substrate-binding protein |
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predicted nickel ABC transporter, substrate-binding protein |
| yntB |
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Gene: STM1256: predicted nickel ABC transporter, permease protein |
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Gene: ETAE_1579: predicted nickel ABC transporter, permease protein |
Gene: PMI2515: predicted nickel ABC transporter, permease protein |
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predicted nickel ABC transporter, permease protein |
| yntC |
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Gene: STM1257: predicted nickel ABC transporter, permease protein |
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Gene: ETAE_1578: predicted nickel ABC transporter, permease protein |
Gene: PMI2514: predicted nickel ABC transporter, permease protein |
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predicted nickel ABC transporter, permease protein |
| yntD |
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Gene: STM1258: predicted nickel ABC transporter, ATP-binding protein |
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Gene: ETAE_1577: predicted nickel ABC transporter, ATP-binding protein |
Gene: PMI2513: predicted nickel ABC transporter, ATP-binding protein |
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predicted nickel ABC transporter, ATP-binding protein |
| yntE |
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Gene: STM1259: predicted nickel ABC transporter, ATPase component |
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Gene: ETAE_1576: predicted nickel ABC transporter, ATPase component |
Gene: PMI2512: predicted nickel ABC transporter, ATPase component |
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predicted nickel ABC transporter, ATPase component |
| CRON 3. | |||||||||||||
| nxiA |
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*
Salmonella typhimurium LT2 Site: position = -79 score = 6.15122 sequence = GTGTGACGTTTTAATCAAATGATCATAC Gene: STM2783: high-affinity nickel-transporter |
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Gene: KPN_03047: high-affinity nickel-transporter |
Gene: Ent638_3184: high-affinity nickel-transporter |
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Gene: y1245: high-affinity nickel-transporter |
Gene: Spro_2422: high-affinity nickel-transporter |
Gene: ECA1252: high-affinity nickel-transporter |
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Edwardsiella tarda EIB202 Site: position = -120 score = 6.85813 sequence = GTATGACAATTTCATGAAAAGATCATAC Gene: ETAE_2654: high-affinity nickel-transporter |
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Gene: plu2170: high-affinity nickel-transporter |
high-affinity nickel-transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |