Regulog LiuQ - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - LiuQ
- By TF family - TetR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | ||
| Ralstonia pickettii 12J | ||
| Ralstonia metallidurans CH34 | 4 | 2 |
| Ralstonia eutropha JMP134 | 7 | 2 |
| Ralstonia eutropha H16 | 5 | 2 |
| Cupriavidus taiwanensis | 3 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| aacS |
|
|
*
Ralstonia metallidurans CH34 Site: position = -48 score = 5.58543 sequence = TTGAGTATTACTCAA Site: position = -149 score = 5.11817 sequence = TTGAATGTTACTCAA Gene: Rmet_0610: AMP-dependent synthetase and ligase |
*
Ralstonia eutropha JMP134 Site: position = -167 score = 4.99667 sequence = TTGACCAACACTCAA Site: position = -59 score = 5.27274 sequence = TTGAGCTACGCTCAA Gene: Reut_A1467: AMP-dependent synthetase and ligase |
*
Ralstonia eutropha H16 Site: position = -59 score = 5.022 sequence = TTGAGTAACACTCAC Site: position = -234 score = 5.34882 sequence = TTGAGCTTTACTCAA Gene: H16_A1971: AMP-dependent synthetase and ligase |
*
Cupriavidus taiwanensis Site: position = -215 score = 4.6206 sequence = TTGAGTCAACCTCAA Site: position = -50 score = 4.79966 sequence = TTGAGTTGTGCTCAA Gene: RALTA_A1548: AMP-dependent synthetase and ligase |
AMP-dependent synthetase and ligase |
| liuA |
|
|
|
Gene: Reut_A1466: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: H16_A1972: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
|
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
| liuB |
|
|
Gene: Rmet_0609: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Reut_A1465: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: H16_A1973: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: RALTA_A1549: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
| liuC |
|
|
|
Gene: Reut_A1464: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
|
|
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
| liuD |
|
|
Gene: Rmet_0608: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Reut_A1463: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: H16_A1974: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: RALTA_A1550: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
| liuE |
|
|
|
Gene: Reut_A1462: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
|
|
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
| CRON 2. | |||||||
| liuQ |
|
|
*
Ralstonia metallidurans CH34 Site: position = -111 score = 5.11817 sequence = TTGAGTAACATTCAA Site: position = -212 score = 5.58543 sequence = TTGAGTAATACTCAA Gene: Rmet_0611: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family |
*
Ralstonia eutropha JMP134 Site: position = -154 score = 5.27274 sequence = TTGAGCGTAGCTCAA Site: position = -46 score = 4.99667 sequence = TTGAGTGTTGGTCAA Gene: Reut_A1468: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family |
*
Ralstonia eutropha H16 Site: position = -72 score = 5.34882 sequence = TTGAGTAAAGCTCAA Site: position = -247 score = 5.022 sequence = GTGAGTGTTACTCAA Gene: H16_A1970: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family |
Gene: RALTA_A1547: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family |
Predicted branched-chain amino acid degradation regulator LiuQ, TetR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |