Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella violacea DSS12

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella violacea DSS12
Orthologous TF(s) SVI_1534
Regulated genes 18
Built upon 312 sites [see more]
Predicted regulatory interactions in Shewanella violacea DSS12
Locus tag Position Score Sequence
Position: -105
Score: 5
Sequence: GTGTAATTATTAATTTACAT
Locus tag: SVI_0728
SVI_0728 -105 5 GTGTAATTATTAATTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: brnQ
Ortholog function: Branched-chain amino acid transport system carrier protein
Shewanella oneidensis MR-1 SO_0949 -121 5 GTGTAAACATAGGTTTGCAC
Shewanella putrefaciens CN-32 Sputcn32_0889 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp W3-18-1 Sputw3181_3284 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp ANA-3 Shewana3_3332 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-4 Shewmr4_0794 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-7 Shewmr7_3229 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella baltica OS155 Sbal_0842 -107 5.1 GTGTAAACAAAGATTTGCAC
Shewanella denitrificans OS217 Sden_0746 -229 4.1 GAGTATCGAAAAGTTTACAC
Shewanella frigidimarina NCIMB 400 Sfri_0662 -122 4.8 GTGTATTTTTAACTTTACAA
Shewanella amazonensis SB2B Sama_2740 -109 4.5 CTGTAATTCTGGCGTTACAC
Shewanella loihica PV-4 Shew_0769 -102 4.6 GTGTAATAAGAAGTTTACAC
Shewanella pealeana ATCC 700345 Spea_0804 -90 5.2 GTGTAAAGTAATAATTACAC
Shewanella halifaxensis HAW-EB4 Shal_0859 -94 5.1 GTGTAAACTAATCATTACAC
Shewanella piezotolerans WP3 swp_4229 -153 5 GTGTAAACCAAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_0892 -106 4.6 GTGTAATTGAAAGTTTACAC
Shewanella woodyi ATCC 51908 Swoo_0894 -67 5.1 GTGTAATCTAAAGTTTACAC
Position: -96
Score: 4.2
Sequence: ATTTCAAGCTAAAGTTACAA
Locus tag: SVI_1283
SVI_1283 -96 4.2 ATTTCAAGCTAAAGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuA
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Shewanella oneidensis MR-1 SO_1897 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1719 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp W3-18-1 Sputw3181_2306 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella sp ANA-3 Shewana3_1672 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-4 Shewmr4_2322 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella sp MR-7 Shewmr7_2394 -105 4.6 GTGGCAACAAGAATTGACAA
Shewanella baltica OS155 Sbal_2828 -108 4.5 ATGGCAATTGGGATTGACAC
Shewanella denitrificans OS217 Sden_2245 -117 4.2 GTGGAAACAGAATTTAACAC
Shewanella frigidimarina NCIMB 400 Sfri_2727 -117 4.7 GTGGCAAGCAAAATTAACAC
Shewanella amazonensis SB2B Sama_1362 -123 4.2 CTGTAAGCTAAGCCTGACAC
Shewanella pealeana ATCC 700345 Spea_2797 -111 4.4 GTGGCAAGCGCAATTGACAT
Shewanella halifaxensis HAW-EB4 Shal_2902 -110 4.4 GTGGCAAGCGCGATTGACAT
Shewanella piezotolerans WP3 swp_3442 -76 4.2 TTGGCACGCACAATTGACAT
Shewanella woodyi ATCC 51908 Swoo_3223 -129 4.5 CTGGAAAACTTACTTGCCAT
Position: -187
Score: 4.5
Sequence: GTGTAAAGTTAATTATACGT
Position: -123
Score: 4.4
Sequence: TTGTAACGAAATTATTACAA
Locus tag: SVI_1532
SVI_1532 -187 4.5 GTGTAAAGTTAATTATACGT
-123 4.4 TTGTAACGAAATTATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO_1666 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella putrefaciens CN-32 Sputcn32_1386 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp W3-18-1 Sputw3181_2715 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp ANA-3 Shewana3_2781 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp MR-4 Shewmr4_2607 -122 4.4 TTGTAATATTTACTTTACGT
Shewanella sp MR-7 Shewmr7_2674 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella baltica OS155 Sbal_1484 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella denitrificans OS217 Sden_2595 -127 4.4 TTGTATGCTTAAGTTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -121 4.1 TTGTATTTATTTGTTTACGA
Shewanella amazonensis SB2B Sama_2222 -123 4.3 TTGTAATAAAAGCTTTACGA
Shewanella loihica PV-4 Shew_1435 -87 4.7 ATGTAAATTTGAGGTTACAT
Shewanella pealeana ATCC 700345 Spea_1448 -239 4.3 GTGTCAATTTCTATATACGC
-173 4.8 GTGTAACATTAGCATTACAC
Shewanella halifaxensis HAW-EB4 Shal_1531 -133 4.3 GTGTAACAACTTCGTTACAC
Shewanella piezotolerans WP3 swp_1650 -188 4.6 CTGTAAATTATGGCTTACAA
-123 4.5 ATGTAAACTTATGGTTACGC
Shewanella sediminis HAW-EB3 Ssed_2930 -188 3.7 TCGTCAATAAATGGTGACGA
-122 4.2 TTGTAAGCAAATTGTTACAC
Shewanella woodyi ATCC 51908 Swoo_1715 -186 3.8 TTGGCAATAATTCAATACGA
-121 4.6 GTGTAACTTTTTGGTTACAA
Position: -163
Score: 4.6
Sequence: CTGTAAACAAGACTTGCCAC
Locus tag: SVI_1534
SVI_1534 -163 4.6 CTGTAAACAAGACTTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Shewanella oneidensis MR-1 SO_1669 -190 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_1388 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp W3-18-1 Sputw3181_2713 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp ANA-3 Shewana3_2779 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-4 Shewmr4_2605 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-7 Shewmr7_2672 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella baltica OS155 Sbal_1486 -196 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella denitrificans OS217 Sden_2593 -155 4.6 CTGTAAACAAGACTTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_1330 -92 4.7 CTGTAAACTTCACTTGCCAC
Shewanella amazonensis SB2B Sama_2220 -134 4.6 CTGTAAACAAGACTTGCCAC
Shewanella loihica PV-4 Shew_1437 -162 4.7 GTGTAAACAACTCTTGCCAC
Shewanella pealeana ATCC 700345 Spea_1450 -158 4.6 CTGTAAACAAGTCTTGCCAC
Shewanella halifaxensis HAW-EB4 Shal_1533 -159 4.1 CTGTAAACAAGCCTTGCCAC
Shewanella piezotolerans WP3 swp_1652 -309 4.6 cTGTAAAcaagtCTTgcCAC
Shewanella sediminis HAW-EB3 Ssed_2928 -151 4.6 CTGTAAACAAGACTTGCCAC
Shewanella woodyi ATCC 51908 Swoo_1717 -161 4.6 CTGTAAACAAGACTTGCCAC
Position: -169
Score: 4.3
Sequence: CTGTAATGATATCTTTACGG
Locus tag: SVI_1535
SVI_1535 -169 4.3 CTGTAATGATATCTTTACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgC
Ortholog function: Fumarylacetoacetase (EC 3.7.1.2)
Shewanella oneidensis MR-1 SO_1670 -323 3.8 ATGTAACAGTATCGTTCCAC
-239 4.3 ACGTAATGATTAGTTTACAG
Shewanella putrefaciens CN-32 Sputcn32_1389 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp W3-18-1 Sputw3181_2712 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp ANA-3 Shewana3_2778 -320 3.8 ATGTAACAGTATCGTTCCAC
-236 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-4 Shewmr4_2604 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-7 Shewmr7_2671 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella baltica OS155 Sbal_1487 -358 3.8 ATGTAACAGTATCGTTCCAC
-274 4 ACGTAATGATTAGTTTACGA
Shewanella denitrificans OS217 Sden_2592 -228 4.1 ATGTAACGAATTAGTGCCAT
-146 4.1 TTGTACTGAAAAGTTTACAG
Shewanella frigidimarina NCIMB 400 Sfri_1331 -155 4.9 TTGTAACGAATAATTTACAA
Shewanella amazonensis SB2B Sama_2219 -234 4.3 GTGTAAAAAGAATTTGCCAG
-150 4.4 CTGTATTTAAAAGTTTACAA
Shewanella loihica PV-4 Shew_1438 -169 4.5 CTGTCATGAATTGTTTACAA
Shewanella pealeana ATCC 700345 Spea_1451 -197 4.8 GTGTATCTATAAGTTTACAC
Shewanella halifaxensis HAW-EB4 Shal_1534 -183 4.7 CTGTAAGTATAAGTTTACAA
Shewanella piezotolerans WP3 swp_1653 -179 4.8 CTGTAATTATATGTTTACAA
Shewanella sediminis HAW-EB3 Ssed_2927 -238 4 ATGTAAAAGCTTGTTGCCAC
-155 4 GTGTAACTGTTTATTTACGT
Shewanella woodyi ATCC 51908 Swoo_1718 -256 4.2 ATGTAACAAGAGATTGCCAC
-172 4.8 CTGTAATTATTTATTTACAA
Position: -109
Score: 4.3
Sequence: ATGTAAAGCTAAACATACGC
Locus tag: SVI_2042
SVI_2042 -109 4.3 ATGTAAAGCTAAACATACGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA1
Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Shewanella oneidensis MR-1 SO_2339 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella putrefaciens CN-32 Sputcn32_1885 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp W3-18-1 Sputw3181_2123 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp ANA-3 Shewana3_2131 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-4 Shewmr4_2028 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-7 Shewmr7_1947 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella baltica OS155 Sbal_4508 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella denitrificans OS217 Sden_1786 -153 4.5 GCGTAAAGCAAATTATACAA
Shewanella frigidimarina NCIMB 400 Sfri_1935 -156 4.5 TCGTAAAGCAATATATACAT
Shewanella amazonensis SB2B Sama_1709 -150 4.3 CTGTAAAGCAATTAATACAT
Shewanella loihica PV-4 Shew_1925 -175 4.7 TTGTAAAGCTAGCGATACAT
Shewanella pealeana ATCC 700345 Spea_2246 -161 4.8 ATGTAAACCAATATATACAT
Shewanella halifaxensis HAW-EB4 Shal_2234 -161 4.8 ATGTAAACCAATATATACAT
Shewanella piezotolerans WP3 swp_2606 -162 4.8 ATGTAAACCAATATATACAT
Shewanella sediminis HAW-EB3 Ssed_2329 -172 4.4 TTGTAAAGCTAAAGATACGC
Shewanella woodyi ATCC 51908 Swoo_2278 -171 4 ATGTAAAGCTAAACATACGG
Position: -114
Score: 4.8
Sequence: GCGTAAAGTAATATTTACAG
Locus tag: SVI_2086
SVI_2086 -114 4.8 GCGTAAAGTAATATTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: emrD
Ortholog function: multidrug resistance protein D
Shewanella oneidensis MR-1 SO_2389 -152 4.5 ATGTAAGCTTAATTTTACAG
Shewanella putrefaciens CN-32 Sputcn32_2030 -257 3.7 ATATCAAGTATTTTATCCAC
-114 4.6 GCGTAAGTTTAACTTTACAA
Shewanella sp W3-18-1 Sputw3181_1983 -257 3.7 ATATCAAGTATTTTATCCAC
-114 4.6 GCGTAAGTTTAACTTTACAA
Shewanella sp ANA-3 Shewana3_1989 -152 4.6 GTGTAAGCTTAGTTTGACAA
Shewanella sp MR-4 Shewmr4_1936 -218 4 GTGGCAATTAATTTTACCAG
-152 4.6 GTGTAAGCTAAATTTTACAG
Shewanella sp MR-7 Shewmr7_2040 -218 4 GTGGCAATTAATTTTACCAG
-152 4.6 GTGTAAGCTAAATTTTACAG
Shewanella baltica OS155 Sbal_2085 -154 4.4 ACGTAAGTTTAGCTTTACAG
Shewanella sediminis HAW-EB3 Ssed_2287 -182 4 CTGTAACGCCATCAATACAA
-161 4 GTGTAAGCTTGCGTTTACAG
Shewanella woodyi ATCC 51908 Swoo_2329 -160 4.1 TCGTAAGTATAGATTTACGC
Position: -107
Score: 4.3
Sequence: TTGGATACAAATAGTTACAT
Position: -13
Score: 3.8
Sequence: ATGGAAGACAATTATGACAA
Locus tag: SVI_2920
SVI_2920 -107 4.3 TTGGATACAAATAGTTACAT
-13 3.8 ATGGAAGACAATTATGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aprE
Ortholog function: Alkaline serine protease
Shewanella sp ANA-3 Shewana3_1443 -357 3.9 TTTGAAATTATTCATTCCAA
Shewanella sp MR-4 Shewmr4_1390 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella sp MR-7 Shewmr7_1455 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella denitrificans OS217 Sden_1409 -105 4.1 GCGTATATAAATGGTTACAT
Shewanella frigidimarina NCIMB 400 Sfri_2692 -333 4.7 CTGCAAAAATATCTTTACAC
Shewanella piezotolerans WP3 swp_3159 -171 4 ACGTAAAGAAATCTGTCCAC
Position: -184
Score: 4.9
Sequence: GTGTAAATATTGAGTGACAA
Locus tag: SVI_3103
SVI_3103 -184 4.9 GTGTAAATATTGAGTGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO_1677 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1397 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1 Sputw3181_2704 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3 Shewana3_2771 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-4 Shewmr4_2597 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-7 Shewmr7_2664 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella baltica OS155 Sbal_1495 -162 4.3 CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217 Sden_1943 -159 4.4 GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_1338 -140 4.1 CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B Sama_1375 -195 3.8 GTGTCAATCTCAGTTCCCGC
-173 4.6 CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4 Shew_1667 -168 4.4 CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345 Spea_2783 -231 4.5 GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4 Shal_2878 -231 4.4 GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3 swp_3387 -75 3.8 TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3 Ssed_1473 -185 4.5 CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908 Swoo_3202 -173 4.7 CTGTAAATCTTGAGTGACAT
Position: -205
Score: 3.8
Sequence: ATGTAAAGGCTGATGTACAA
Locus tag: SVI_3324
SVI_3324 -205 3.8 ATGTAAAGGCTGATGTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1117
Ortholog function: peptidase M17, leucyl aminopeptidase
Shewanella putrefaciens CN-32 Sputcn32_0955 -116 3.9 CTGGCAGCCAAAGTTGCCAG
Shewanella sp W3-18-1 Sputw3181_3221 -116 3.9 CTGGCAGCCAAAGTTGCCAG
Shewanella baltica OS155 Sbal_0941 -116 4 CTGGCAGCCAAAGTTTCCAG
Shewanella amazonensis SB2B Sama_2518 -45 4.4 GTGGAAGCCAAAGTTTCCAG
Shewanella loihica PV-4 Shew_2851 -320 4.6 GTGTCATACTAAGTTGCCAC
Shewanella pealeana ATCC 700345 Spea_3090 -111 4.5 TTGTCAGCCAAAGTTTCCAC
Shewanella piezotolerans WP3 swp_1181 -106 4 GTGTCAGCAGAAGTTGCCAT
Shewanella woodyi ATCC 51908 Swoo_3602 -151 3.8 CTGTCATTGAAAGTTGCCAA
Position: -44
Score: 3.8
Sequence: TTGTACATCAGCCTTTACAT
Locus tag: SVI_3325
SVI_3325 -44 3.8 TTGTACATCAGCCTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepD
Ortholog function: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Shewanella putrefaciens CN-32 Sputcn32_0954 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella sp W3-18-1 Sputw3181_3222 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella baltica OS155 Sbal_0940 -123 4 CTGGAAACTTTGGCTGCCAG
Shewanella amazonensis SB2B Sama_2519 -123 4.4 CTGGAAACTTTGGCTTCCAC
Shewanella loihica PV-4 Shew_2852 -123 4.6 GTGGCAACTTAGTATGACAC
Shewanella pealeana ATCC 700345 Spea_3091 -141 4.5 GTGGAAACTTTGGCTGACAA
Shewanella halifaxensis HAW-EB4 Shal_3175 -160 4.6 GTGGAAACTTTGCCTGACAA
Shewanella piezotolerans WP3 swp_1180 -140 4 ATGGCAACTTCTGCTGACAC
Shewanella woodyi ATCC 51908 Swoo_3603 -180 3.8 TTGGCAACTTTCAATGACAG
Position: -269
Score: 4
Sequence: AAGGAAACCTTTACTTACAC
Locus tag: SVI_3432
SVI_3432 -269 4 AAGGAAACCTTTACTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep3
Ortholog function: peptidase, M13 family
Shewanella oneidensis MR-1 SO_3844 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella putrefaciens CN-32 Sputcn32_0791 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp W3-18-1 Sputw3181_3384 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp ANA-3 Shewana3_0759 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-4 Shewmr4_3179 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-7 Shewmr7_0787 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella baltica OS155 Sbal_0685 -173 4 CTGGTAACCTTTAGTTACAT
Shewanella denitrificans OS217 Sden_1089 -224 3.8 TTGGTTACATAAATTGCCAG
Shewanella loihica PV-4 Shew_2973 -180 4.1 GAGGAAATCTTTACTTACAT
Shewanella pealeana ATCC 700345 Spea_3177 -237 3.8 TGGGAAACCTTTTCTTACAC
Shewanella halifaxensis HAW-EB4 Shal_3258 -202 3.9 TAGGAAACCTTTTCTTACAC
Shewanella piezotolerans WP3 swp_3866 -189 3.9 TAGGAAACCTTTTCTTACAC
Shewanella sediminis HAW-EB3 Ssed_3509 -218 4 AAGGAAACCTTTACTTACAC
Shewanella woodyi ATCC 51908 Swoo_0911 -178 3.7 AAGGAAACCTTTTCTTACAT
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