Propagation of LexA regulog to Shewanella sp ANA-3
Source regulog: | LexA - Shewanellaceae |
Regulator type: | Transcription factor |
Regulator family: | LexA |
Regulation mode: | repressor |
Biological process: | SOS response |
Effector: | DNA damage |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Shewanella sp ANA-3 |
Orthologous TF(s) | Shewana3_3989 |
Regulated genes | 9 |
Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -21
Score: 4.3 Sequence: ATATGTATAAATTCACAGTG
Locus tag: Shewana3_0348
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Shewana3_0348 | -21 | 4.3 | ATATGTATAAATTCACAGTG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: recG | ||||
Ortholog function: ATP-dependent DNA helicase RecG (EC 3.6.1.-) | ||||
Shewanella oneidensis MR-1 | SO_4364 | -45 | 4.3 | ATATGTATAAATTCACAGTG |
Shewanella putrefaciens CN-32 | Sputcn32_0450 | -21 | 4.3 | ATATGTATAAATTCACAGTG |
Shewanella sp W3-18-1 | Sputw3181_0304 | -21 | 4.3 | ATATGTATAAATTCACAGTG |
Shewanella sp ANA-3 | Shewana3_0348 | -21 | 4.3 | ATATGTATAAATTCACAGTG |
Shewanella sp MR-4 | Shewmr4_0354 | -21 | 4.3 | ATATGTATAAATTCACAGTG |
Shewanella sp MR-7 | Shewmr7_3672 | -21 | 4.3 | ATATGTATAAATTCACAGTG |
Shewanella baltica OS155 | Sbal_0346 | -21 | 4.3 | ATATGTATAAATTCACAGTG |
Shewanella denitrificans OS217 | Sden_3476 | -36 | 4.8 | ATATGTATAAATTTACAGTG |
Shewanella frigidimarina NCIMB 400 | Sfri_0356 | -47 | 5.3 | ATCTGTATATAATTACAGTG |
Shewanella amazonensis SB2B | Sama_3375 | -36 | 4.4 | ATATGTATAAATTCACAGTA |
Shewanella loihica PV-4 | Shew_3507 | -71 | 5.1 | ATATGTATATATTTACAGTA |
Shewanella pealeana ATCC 700345 | Spea_3884 | -21 | 4.8 | ATATGTATAAATTTACAGTG |
Shewanella halifaxensis HAW-EB4 | Shal_0385 | -21 | 4.8 | ATATGTATAAATTTACAGTG |
Shewanella piezotolerans WP3 | swp_0309 | -21 | 4.8 | ATATGTATAAATTTACAGTG |
Shewanella sediminis HAW-EB3 | Ssed_0329 | -71 | 4.5 | ATATGTATATAAACACAGTG |
Shewanella woodyi ATCC 51908 | Swoo_4592 | -68 | 5 | ATATGTATATAAATACAGTG |
Position: -44
Score: 6.1 Sequence: TACTGTTTTTATATACAGTA
Locus tag: Shewana3_0949
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Shewana3_0949 | -44 | 6.1 | TACTGTTTTTATATACAGTA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: dinB | ||||
Ortholog function: DNA polymerase IV (EC 2.7.7.7) | ||||
Shewanella oneidensis MR-1 | SO_1114 | -44 | 5.9 | AACTGTTTTTATATACAGTA |
Shewanella putrefaciens CN-32 | Sputcn32_0951 | 20 | 5.7 | TACTGGTTTTATATACAGTA |
Shewanella sp W3-18-1 | Sputw3181_3225 | -43 | 5.7 | TACTGGTTTTATATACAGTA |
Shewanella sp ANA-3 | Shewana3_0949 | -44 | 6.1 | TACTGTTTTTATATACAGTA |
Shewanella sp MR-4 | Shewmr4_0947 | -44 | 6.1 | TACTGTTTTTATATACAGTA |
Shewanella sp MR-7 | Shewmr7_0985 | -44 | 6.1 | TACTGTTTTTATATACAGTA |
Shewanella baltica OS155 | Sbal_0935 | -43 | 6.1 | TACTGTTTTTATATACAGTA |
Shewanella denitrificans OS217 | Sden_1185 | -52 | 5.8 | CACTGTTTTTTTATACAGTA |
Shewanella frigidimarina NCIMB 400 | Sfri_0961 | -57 | 6.1 | TACTGTTTTTATATACAGTA |
Shewanella amazonensis SB2B | Sama_2527 | -36 | 6.1 | TACTGTTTTTATATACAGTA |
Shewanella loihica PV-4 | Shew_2871 | -43 | 5.9 | TACTGTTTAAATGTACAGTA |
Shewanella pealeana ATCC 700345 | Spea_3092 | -44 | 6.1 | TACTGTTTTTATATACAGTA |
Shewanella halifaxensis HAW-EB4 | Shal_3176 | -44 | 6.1 | TACTGTTTTTATATACAGTA |
Shewanella piezotolerans WP3 | swp_1179 | -95 | 6.1 | TACTGTTTTTATATACAGTA |
Shewanella sediminis HAW-EB3 | Ssed_3422 | -56 | 6 | TACTGTTTAAATATACAGTA |
Shewanella woodyi ATCC 51908 | Swoo_3604 | -52 | 6 | CACTGTTTTTATATACAGTA |
Position: -72
Score: 5.9 Sequence: TACTGTATATAAATTCAGTA
Position: -50
Score: 5.6 Sequence: TACTGTTTATCAATACAGTG
Locus tag: Shewana3_1104
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Shewana3_1104 | -72 | 5.9 | TACTGTATATAAATTCAGTA | |
-50 | 5.6 | TACTGTTTATCAATACAGTG | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: recN | ||||
Ortholog function: DNA repair protein RecN | ||||
Shewanella oneidensis MR-1 | SO_3462 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
-50 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella putrefaciens CN-32 | Sputcn32_2771 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
-50 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella sp W3-18-1 | Sputw3181_1241 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
-50 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella sp ANA-3 | Shewana3_1104 | -72 | 5.9 | TACTGTATATAAATTCAGTA |
-50 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella sp MR-4 | Shewmr4_1104 | -72 | 5.9 | TACTGTATATAAATTCAGTA |
-50 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella sp MR-7 | Shewmr7_1170 | -72 | 5.9 | TACTGTATATAAATTCAGTA |
-50 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella baltica OS155 | Sbal_3153 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
-50 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella denitrificans OS217 | Sden_1151 | -71 | 5.4 | TACTGTATAAAAAACCAGTG |
-49 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella frigidimarina NCIMB 400 | Sfri_1043 | -72 | 5.8 | TACTGTATATAAAATCAGTA |
-50 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella amazonensis SB2B | Sama_1026 | -73 | 5.4 | TACTGTACAAAAAATCAGTA |
-51 | 5.3 | TACTGTGTATCAATACAGTA | ||
Shewanella loihica PV-4 | Shew_1196 | -62 | 5.7 | TACTGTATAAAAATTCAGTA |
-40 | 4.9 | TACTGTGCATGAATACAGTA | ||
Shewanella pealeana ATCC 700345 | Spea_1169 | -62 | 5.9 | TACTGTATGAATAAACAGTA |
-40 | 5.3 | TACTGTTTAACCATACAGTG | ||
Shewanella halifaxensis HAW-EB4 | Shal_1212 | -62 | 5.8 | TACTGTATAGATAAACAGTA |
-40 | 5.5 | TACTGTTTAACTATACAGTG | ||
Shewanella piezotolerans WP3 | swp_1346 | -61 | 5.7 | TACTGTATAGAAAAACAGTA |
-39 | 5.6 | TACTGTTTATCAATACAGTG | ||
Shewanella sediminis HAW-EB3 | Ssed_1281 | -62 | 5.8 | TACTGTATATAAAATCAGTA |
-40 | 5.5 | TACTGTTTAAAAACACAGTA | ||
Shewanella woodyi ATCC 51908 | Swoo_3359 | -64 | 5.9 | TACTGTATTTATGAACAGTA |
-42 | 5.9 | TACTGTTCATAAATACAGTA | ||
Position: -128
Score: 5.6 Sequence: TACTGTATGATTGTACAGTA
Locus tag: Shewana3_1126
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Shewana3_1126 | -128 | 5.6 | TACTGTATGATTGTACAGTA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: recA | ||||
Ortholog function: Recombinase A | ||||
Shewanella oneidensis MR-1 | SO_3430 | -127 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella putrefaciens CN-32 | Sputcn32_2747 | -129 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella sp W3-18-1 | Sputw3181_1265 | -129 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella sp ANA-3 | Shewana3_1126 | -128 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella sp MR-4 | Shewmr4_1125 | -128 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella sp MR-7 | Shewmr7_1196 | -128 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella baltica OS155 | Sbal_3117 | -127 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella denitrificans OS217 | Sden_1208 | -203 | 5.8 | TACTGTATGATTATACAGTA |
Shewanella frigidimarina NCIMB 400 | Sfri_1062 | -113 | 5.5 | TACTGTATGACTATACAGTA |
Shewanella amazonensis SB2B | Sama_1046 | -115 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella loihica PV-4 | Shew_1215 | -127 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella pealeana ATCC 700345 | Spea_1195 | -124 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella halifaxensis HAW-EB4 | Shal_1232 | -124 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella piezotolerans WP3 | swp_1366 | -123 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella sediminis HAW-EB3 | Ssed_1300 | -135 | 5.6 | TACTGTATGATTGTACAGTA |
Shewanella woodyi ATCC 51908 | Swoo_3340 | -124 | 5.5 | TACTGTATGACTATACAGTA |
Position: -32
Score: 5.4 Sequence: CACTGTAATTATATCCAGTG
Locus tag: Shewana3_1486
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Shewana3_1486 | -32 | 5.4 | CACTGTAATTATATCCAGTG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: topB | ||||
Ortholog function: DNA topoisomerase III (EC 5.99.1.2) | ||||
Shewanella oneidensis MR-1 | SO_3061 | -32 | 5.7 | TACTGTAATTATATCCAGTA |
Shewanella putrefaciens CN-32 | Sputcn32_2435 | -32 | 5.6 | TACTGTAATTATATCCAGTG |
Shewanella sp W3-18-1 | Sputw3181_1573 | -32 | 5.6 | TACTGTAATTATATCCAGTG |
Shewanella sp ANA-3 | Shewana3_1486 | -32 | 5.4 | CACTGTAATTATATCCAGTG |
Shewanella sp MR-4 | Shewmr4_1433 | -32 | 5.6 | CACTGTAATTATATCCAGTA |
Shewanella sp MR-7 | Shewmr7_1498 | 30 | 5.6 | CACTGTAATTATATCCAGTA |
Shewanella baltica OS155 | Sbal_2736 | -32 | 5.6 | TACTGTAATTATATCCAGTG |
Shewanella denitrificans OS217 | Sden_2400 | -41 | 5.6 | CACTGTAATTACATACAGTG |
Shewanella frigidimarina NCIMB 400 | Sfri_1401 | -67 | 5.8 | TACTGTAAATTTATACAGTT |
Shewanella amazonensis SB2B | Sama_2145 | 29 | 5.3 | TACTGTAAATTCATCCAGTG |
Shewanella loihica PV-4 | Shew_2299 | -32 | 5.9 | TACTGTTAATTTATACAGTA |
Shewanella pealeana ATCC 700345 | Spea_1625 | -36 | 5.9 | TACTGTTAATTTATACAGTA |
Shewanella halifaxensis HAW-EB4 | Shal_2636 | -36 | 5.9 | TACTGTTAATTTATACAGTA |
Shewanella piezotolerans WP3 | swp_3111 | -36 | 5.8 | TACTGTTAATTTATACAGTG |
Shewanella sediminis HAW-EB3 | Ssed_1658 | -38 | 5.4 | TACTGGTAATTTATACAGTG |
Shewanella woodyi ATCC 51908 | Swoo_2976 | -35 | 5.4 | TACTGGTAATTTATACAGTG |
Position: -31
Score: 6 Sequence: TACTGTATATAAAAACAGTG
Locus tag: Shewana3_1775
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Shewana3_1775 | -31 | 6 | TACTGTATATAAAAACAGTG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yebG | ||||
Ortholog function: SOS regulon DNA damage-inducible protein | ||||
Shewanella oneidensis MR-1 | SO_2604 | -31 | 6 | TACTGTATATAAAAACAGTG |
Shewanella putrefaciens CN-32 | Sputcn32_2205 | -30 | 6 | TACTGTATATAAAAACAGTG |
Shewanella sp W3-18-1 | Sputw3181_1804 | -30 | 6 | TACTGTATATAAAAACAGTG |
Shewanella sp ANA-3 | Shewana3_1775 | -31 | 6 | TACTGTATATAAAAACAGTG |
Shewanella sp MR-4 | Shewmr4_1670 | -31 | 6 | TACTGTATATAAAAACAGTG |
Shewanella sp MR-7 | Shewmr7_1745 | -31 | 6 | TACTGTATATAAAAACAGTG |
Shewanella baltica OS155 | Sbal_2450 | -31 | 6 | TACTGTATATAAAAACAGTG |
Shewanella denitrificans OS217 | Sden_1719 | -31 | 6 | CACTGTATATAAAAACAGTA |
Shewanella frigidimarina NCIMB 400 | Sfri_2231 | -31 | 5.9 | CACTGTATATAAAAACAGTG |
Shewanella amazonensis SB2B | Sama_1582 | -31 | 5.8 | CACTGTATAAATAAACAGTG |
Shewanella loihica PV-4 | Shew_1799 | -31 | 5.7 | AACTGTATATAAAAACAGTG |
Shewanella pealeana ATCC 700345 | Spea_1932 | -31 | 5.9 | CACTGTATATAAAAACAGTG |
Shewanella halifaxensis HAW-EB4 | Shal_2367 | -31 | 6 | TACTGTATATAAAAACAGTG |
Shewanella piezotolerans WP3 | swp_2821 | 11 | 6 | TACTGTATATAAAAACAGTG |
Shewanella sediminis HAW-EB3 | Ssed_2486 | -31 | 5.9 | AACTGTATATAAAAACAGTA |
Shewanella woodyi ATCC 51908 | Swoo_2130 | -31 | 5.9 | AACTGTATATAAAAACAGTA |
Position: 14
Score: 6 Sequence: TACTGTATTTACATACAGTA
Locus tag: Shewana3_1833
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Shewana3_1833 | 14 | 6 | TACTGTATTTACATACAGTA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: umuD | ||||
Ortholog function: DNA polymerase V, subunit UmuD | ||||
Shewanella sp ANA-3 | Shewana3_1833 | 14 | 6 | TACTGTATTTACATACAGTA |
Shewanella sp MR-4 | Shewmr4_1782 | 14 | 6 | TACTGTACTTATATACAGTA |
Shewanella sp MR-7 | Shewmr7_2195 | 14 | 6.2 | TACTGTATTTATATACAGTA |
Position: -43
Score: 5.4 Sequence: CACTGTTATTATGTACAGCA
Locus tag: Shewana3_2630
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Shewana3_2630 | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: dinG | ||||
Ortholog function: ATP-dependent helicase DinG/Rad3 | ||||
Shewanella oneidensis MR-1 | SO_1819 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella putrefaciens CN-32 | Sputcn32_1513 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella sp W3-18-1 | Sputw3181_2587 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella sp ANA-3 | Shewana3_2630 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella sp MR-4 | Shewmr4_2470 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella sp MR-7 | Shewmr7_2538 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella baltica OS155 | Sbal_1629 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella denitrificans OS217 | Sden_2429 | -52 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella frigidimarina NCIMB 400 | Sfri_2630 | -51 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella amazonensis SB2B | Sama_1249 | -42 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella loihica PV-4 | Shew_2483 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella pealeana ATCC 700345 | Spea_2656 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella halifaxensis HAW-EB4 | Shal_2730 | -43 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella piezotolerans WP3 | swp_3212 | -10 | 5.4 | CACTGTTATTATGTACAGCA |
Shewanella sediminis HAW-EB3 | Ssed_1566 | -36 | 5.1 | CACTGTTATTATGTACAGCT |
Shewanella woodyi ATCC 51908 | Swoo_3086 | -37 | 5.1 | CACTGTTATTATGTACAGCT |
Position: -45
Score: 5.9 Sequence: TACTGTATATACTAACAGTA
Position: -26
Score: 5 Sequence: AACTGTATAGAAAAACAGGA
Locus tag: Shewana3_3989
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Shewana3_3989 | -45 | 5.9 | TACTGTATATACTAACAGTA | |
-26 | 5 | AACTGTATAGAAAAACAGGA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: lexA | ||||
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88) | ||||
Shewanella oneidensis MR-1 | SO_4603 | -45 | 5.9 | TACTGTATATACTAACAGTA |
-26 | 5 | AACTGTATAGAAAAACAGGA | ||
Shewanella putrefaciens CN-32 | Sputcn32_3780 | -45 | 5.9 | TACTGTATATACTAACAGTA |
-26 | 5 | AACTGTATAGAAAAACAGGA | ||
Shewanella sp W3-18-1 | Sputw3181_0135 | -45 | 5.9 | TACTGTATATACTAACAGTA |
-26 | 5 | AACTGTATAGAAAAACAGGA | ||
Shewanella sp ANA-3 | Shewana3_3989 | -45 | 5.9 | TACTGTATATACTAACAGTA |
-26 | 5 | AACTGTATAGAAAAACAGGA | ||
Shewanella sp MR-4 | Shewmr4_3789 | -45 | 5.9 | TACTGTATATACTAACAGTA |
-26 | 5 | AACTGTATAGAAAAACAGGA | ||
Shewanella sp MR-7 | Shewmr7_3862 | -45 | 5.9 | TACTGTATATACTAACAGTA |
-26 | 5 | AACTGTATAGAAAAACAGGA | ||
Shewanella baltica OS155 | Sbal_0156 | -45 | 5.9 | TACTGTATATACTAACAGTA |
-26 | 5 | AACTGTATAGAAAAACAGGA | ||
Shewanella denitrificans OS217 | Sden_3515 | -45 | 5.1 | TACTGTATATAATGACAGTC |
-26 | 5.1 | CACTGTATAAAAAGACAGGA | ||
Shewanella frigidimarina NCIMB 400 | Sfri_0260 | -45 | 5 | CACTGTATATAATGACAGTC |
-26 | 5.1 | CACTGTATAAAAAGACAGGA | ||
Shewanella amazonensis SB2B | Sama_3481 | -45 | 5.6 | TACTGTATATACTGACAGTA |
-26 | 5 | AACTGTATAGAAAAACAGGA | ||
Shewanella loihica PV-4 | Shew_0127 | -45 | 4.9 | TACTGTATATACTGACAGGT |
-26 | 4.8 | TACTGTATGGAAAGACAGGA | ||
Shewanella pealeana ATCC 700345 | Spea_3997 | -45 | 5.2 | TACTGTATATACTAACAGGT |
-26 | 4.9 | TACTGTATAGAAAGACAGGG | ||
Shewanella halifaxensis HAW-EB4 | Shal_0260 | -45 | 4.9 | TACTGTATATACTGACAGGT |
-26 | 4.9 | TACTGTATAGAAAGACAGGG | ||
Shewanella piezotolerans WP3 | swp_4821 | -45 | 5.2 | TACTGTATATACTAACAGGT |
-26 | 5 | TACTGTATAGAAAAACAGGT | ||
Shewanella sediminis HAW-EB3 | Ssed_0200 | -45 | 5.6 | TACTGTATATACTAACAGTT |
-26 | 5 | TACTGTATAGAAAGACAGGA | ||
Shewanella woodyi ATCC 51908 | Swoo_0180 | -45 | 5.3 | TACTGTATATACTGACAGTT |
-26 | 5 | TACTGTATAGAAAGACAGGA | ||