Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Bacillus sp. NRRL B-14911

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus sp. NRRL B-14911
Orthologous TF(s) B14911_00630
Regulated genes 53
Built upon 445 sites [see more]
Predicted regulatory interactions in Bacillus sp. NRRL B-14911
Locus tag Position Score Sequence
Position: -28
Score: 4.8
Sequence: AATAGTTTGAAAATT
Locus tag: B14911_24775
B14911_24775 -28 4.8 AATAGTTTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybbF
Ortholog function: PTS system, IIB component (EC 2.7.1.69) / PTS system, IIC component (EC 2.7.1.69)
Bacillus subtilis subsp. subtilis str. 168 BSU01680 -95 4.4 AAATTTCAAAAATTT
-48 4.6 AATATACTGAATATT
Bacillus pumilus SAFR-032 BPUM_0156 -131 4.5 TATTTTCTAACTATT
Bacillus licheniformis DSM 13 BLi00189 -53 4.8 AATATACTGAAAATT
Position: -201
Score: 4.6
Sequence: TATTTTTAAAATATT
Position: -192
Score: 4.2
Sequence: AATATTATGAAAGTT
Locus tag: B14911_27855
B14911_27855 -201 4.6 TATTTTTAAAATATT
-192 4.2 AATATTATGAAAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168 BSU11870 -297 4.6 AATTATTAGAAATTT
-214 4.3 AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_011930 -314 4.6 AATTATTAGAAATTT
Bacillus pumilus SAFR-032 BPUM_1119 -297 4.4 AAAATACAGAAAATT
-287 4.1 AAATTTCAATTAATT
Bacillus licheniformis DSM 13 BLi01289 -164 4 AACAATCAGAATATT
Anoxybacillus flavithermus WK1 Aflv_2067 -228 4.4 ATTTTTCGGAAAATA
-200 4.6 AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426 GK0866 -341 4.5 AAATTTAAAAAAATT
Bacillus cereus ATCC 14579 BC4253 -344 4.4 AATTTTTTAATAAAT
Paenibacillus sp. JDR-2 Pjdr2_4798 -6 4.4 AACTTTATGAAAATT
Position: -109
Score: 4.3
Sequence: ATTATTCATACAATT
Locus tag: B14911_27870
B14911_27870 -109 4.3 ATTATTCATACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus cereus ATCC 14579 BC1252 -231 4.4 ATTTTTCTGTAAAAT
Bacillus halodurans C-125 BH2206 -232 4.3 TATTTTCAGAATTTA
Position: -89
Score: 4.8
Sequence: AATATTAAGAATATT
Locus tag: B14911_28430
B14911_28430 -89 4.8 AATATTAAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybgE
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus subtilis subsp. subtilis str. 168 BSU02390 -118 4.9 AATATTCTGAAATTT
-38 4.6 AATATTTAAACAATT
Bacillus amyloliquefaciens FZB42 RBAM_002760 -152 4.4 AAAATTTTGATAATT
Bacillus amyloliquefaciens FZB42 RBAM_035750 -48 4.3 TATTTTCAAATAAGT
Bacillus pumilus SAFR-032 BPUM_3500 -226 4.4 AATTGTCAGATTAAT
Position: -160
Score: 4.9
Sequence: AATTTTATGAAAATA
Locus tag: B14911_15177
B14911_15177 -160 4.9 AATTTTATGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cueR
Ortholog function: Transcriptional regulator, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU09560 -139 4.4 AAAAATTTGAAAATT
Bacillus pumilus SAFR-032 BPUM_0905 -153 5 AATAATCTGAAAATT
Bacillus licheniformis DSM 13 BLi01027 -112 4.5 AATATTTAGATAAAT
Position: -120
Score: 4.1
Sequence: AATTATTTAAATTTT
Position: -111
Score: 5.3
Sequence: AATTTTTAGAAAATT
Position: -69
Score: 4.5
Sequence: AATTGACTAAAAATT
Locus tag: B14911_20733
B14911_20733 -120 4.1 AATTATTTAAATTTT
-111 5.3 AATTTTTAGAAAATT
-69 4.5 AATTGACTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: comK
Ortholog function: Competence transcription factor
Bacillus subtilis subsp. subtilis str. 168 BSU10420 -225 4.5 AATTTTTAGACAACT
Bacillus amyloliquefaciens FZB42 RBAM_010600 -88 4.2 TATATTCAAAAAAAA
Bacillus pumilus SAFR-032 BPUM_0978 -222 5 AATTTTTAGACAATT
Bacillus licheniformis DSM 13 BLi01119 -205 5.3 AATTTTTAGAAAATT
Oceanobacillus iheyensis HTE831 OB1177 -94 4.5 TTTATTCTAAAAATT
Position: -243
Score: 4.3
Sequence: AATTGTCAGAATAGA
Position: -156
Score: 4.6
Sequence: AATTTACTGACTATT
Locus tag: B14911_21268
B14911_21268 -243 4.3 AATTGTCAGAATAGA
-156 4.6 AATTTACTGACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bacillus subtilis subsp. subtilis str. 168 BSU11430 -116 4.3 AATAATCAGAAAAGA
Bacillus amyloliquefaciens FZB42 RBAM_011430 -115 4.3 AATAATCAGAAAAGA
Position: -196
Score: 4.6
Sequence: AATTTTTAAAATATA
Locus tag: B14911_06036
B14911_06036 -196 4.6 AATTTTTAAAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yslB
Ortholog function: Predicted hydrocarbon binding protein (V4R domain)
Bacillus amyloliquefaciens FZB42 RBAM_025530 -213 4.5 AATTTATTGACAATT
Bacillus pumilus SAFR-032 BPUM_2504 -201 4.5 AATTTATTGACAATT
-134 4.5 AATTTTCCGAAATTT
Bacillus licheniformis DSM 13 BLi02995 -151 4.9 AATTTTCTAAAATTT
-132 4.5 ATATTTTTGAAAATT
Position: -170
Score: 4.7
Sequence: AATTATCAAATAATT
Locus tag: B14911_06111
B14911_06111 -170 4.7 AATTATCAAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus pumilus SAFR-032 BPUM_2473 -166 4.7 AATTGTCTAATAATT
-54 4.6 AAGTGTCTGAAAATT
Bacillus licheniformis DSM 13 BLi02962 -192 4.7 AATTGTCTAATAATT
Anoxybacillus flavithermus WK1 Aflv_0590 -136 4.8 AATAATCAAAAAATT
-79 4.7 AATTTTCAAATAAAT
Bacillus cereus ATCC 14579 BC1396 -167 4.4 AATTTTTTGACTTTT
-88 5.3 AATTTTCTAAAAATT
Position: -43
Score: 4
Sequence: AATTTAAATAAAAAT
Locus tag: B14911_06126
B14911_06126 -43 4 AATTTAAATAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86)
Bacillus subtilis subsp. subtilis str. 168 BSU28290 -633 4.1 ATTAATAAAAAAATT
-544 4.7 AATTGTCTAATAATT
Bacillus amyloliquefaciens FZB42 RBAM_025350 -464 4.7 AATTGTCTAATAATT
Oceanobacillus iheyensis HTE831 OB2621 -508 4.1 AATAATTAAAAAACT
Position: -38
Score: 5.2
Sequence: AATTATCAGAAAATT
Locus tag: B14911_08817
B14911_08817 -38 5.2 AATTATCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Bacillus subtilis subsp. subtilis str. 168 BSU23070 -44 4.5 AATTATCAGATATTT
Bacillus amyloliquefaciens FZB42 RBAM_021220 -44 4.5 AATTATCAGATATTT
Bacillus pumilus SAFR-032 BPUM_2039 -45 4.5 AATTATCAGATATTT
Bacillus licheniformis DSM 13 BLi02446 -43 4.5 AATTATCAGATATTT
Anoxybacillus flavithermus WK1 Aflv_1055 -47 4.8 AATTATCAGAAATTT
Geobacillus kaustophilus HTA426 GK2247 -86 4.8 AATTATCAGAAATTT
Position: -113
Score: 4.6
Sequence: AATTTATAGAATATT
Locus tag: B14911_19890
B14911_19890 -113 4.6 AATTTATAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltZ
Ortholog function: Proton/glutamate symport protein @ Sodium/glutamate symport protein
Bacillus licheniformis DSM 13 BLi03198 -98 4.5 TATTATTTGAAAATA
Oceanobacillus iheyensis HTE831 OB2303 -49 4.5 AATTGTTAGAATAAT
Position: -66
Score: 4.6
Sequence: ATTATTAAGAAAATT
Locus tag: B14911_24225
B14911_24225 -66 4.6 ATTATTAAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citR
Ortholog function: Transcriptional regulator of citrate synthase, LysR family
Bacillus subtilis subsp. subtilis str. 168 BSU09430 -68 4.6 AATATTTAAAAAATA
Bacillus amyloliquefaciens FZB42 RBAM_009690 -67 4.6 AATATTTAAAAAATA
Bacillus licheniformis DSM 13 BLi01009 -65 4.6 AATATTTAAAAAATA
Position: -29
Score: 4.6
Sequence: AATTTTCTTAATAAT
Locus tag: B14911_24230
B14911_24230 -29 4.6 AATTTTCTTAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citA
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Bacillus subtilis subsp. subtilis str. 168 BSU09440 -55 4.6 TATTTTTTAAATATT
Bacillus amyloliquefaciens FZB42 RBAM_009700 -51 4.6 TATTTTTTAAATATT
Bacillus licheniformis DSM 13 BLi01010 -60 4.6 TATTTTTTAAATATT
Position: -42
Score: 4.7
Sequence: AATAGTAAGAAAATT
Position: -33
Score: 4.4
Sequence: AAAATTCAAAATATT
Locus tag: B14911_21613
B14911_21613 -42 4.7 AATAGTAAGAAAATT
-33 4.4 AAAATTCAAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: D-aminopeptidase (EC 3.4.11.-)
Bacillus subtilis subsp. subtilis str. 168 BSU12920 -43 4.5 ATTTGTTAGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_012770 -58 4.5 ATTTGTTAGAATATT
Bacillus pumilus SAFR-032 BPUM_1184 -55 5 ATTTTTTAGAAAATT
Bacillus licheniformis DSM 13 BLi01392 -61 4.5 ATTTGTTAGAATATT
Oceanobacillus iheyensis HTE831 OB2971 -96 4.5 AATATTCAGATTAAT
-41 4.5 AATTAATAGAAAATT
Position: 18
Score: 4.4
Sequence: AATAATCTGAAAAAA
Locus tag: B14911_15920
B14911_15920 18 4.4 AATAATCTGAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Anoxybacillus flavithermus WK1 Aflv_2790 -122 4.7 TATTTTTATAAAATT
Geobacillus kaustophilus HTA426 GK3455 -264 4.8 AATATTCTGTAAATT
Oceanobacillus iheyensis HTE831 OB1006 -108 4.4 ATTTTTCTGAAATAT
Position: -65
Score: 5.1
Sequence: AATTTTTAAAAAATT
Locus tag: B14911_23715
B14911_23715 -65 5.1 AATTTTTAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcI
Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Bacillus pumilus SAFR-032 BPUM_2600 -158 4.6 AATAGTTTGAATATT
Bacillus cereus ATCC 14579 BC4645 -58 4.7 AATTAACTGAAAATT
Oceanobacillus iheyensis HTE831 OB2643 -96 4.5 TATAATCAGAATATT
Position: -75
Score: 4.9
Sequence: AATATTTTAAAAATT
Locus tag: B14911_23800
B14911_23800 -75 4.9 AATATTTTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -78 4.6 TATATTTTAAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_026800 -73 4.6 TATATTTTAAAAATT
Bacillus pumilus SAFR-032 BPUM_2616 -77 4.6 AGTTTTTTAAAAATT
Bacillus licheniformis DSM 13 BLi03119 -74 4.8 TATTTTTTAAAAATT
Anoxybacillus flavithermus WK1 Aflv_0462 -77 5.1 AATTTTTTAAAAATT
Geobacillus kaustophilus HTA426 GK2806 -102 4.4 AAATTTCAAAAAAGT
-77 4.9 AATATTTTAAAAATT
Bacillus cereus ATCC 14579 BC4659 -69 4.8 AATATACTGAAAATT
Position: -188
Score: 4.9
Sequence: AATTTTTAAAATATT
Locus tag: B14911_23805
B14911_23805 -188 4.9 AATTTTTAAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Bacillus subtilis subsp. subtilis str. 168 BSU29690 -97 4.6 AATTTTTAAAATATA
Bacillus amyloliquefaciens FZB42 RBAM_026810 -100 4.6 AATTTTTAAAATATA
Bacillus pumilus SAFR-032 BPUM_2617 -93 4.6 AATTTTTAAAAAACT
Bacillus licheniformis DSM 13 BLi03120 -96 4.8 AATTTTTAAAAAATA
Anoxybacillus flavithermus WK1 Aflv_0461 -101 5.1 AATTTTTAAAAAATT
Geobacillus kaustophilus HTA426 GK2807 -112 4.9 AATTTTTAAAATATT
-87 4.4 ACTTTTTTGAAATTT
Bacillus cereus ATCC 14579 BC4660 -110 4.8 AATTTTCAGTATATT
Oceanobacillus iheyensis HTE831 OB2221 -85 4.6 AAATTTCAAAAAATA
Position: -182
Score: 4.5
Sequence: TATATTATAAAAATT
Position: -94
Score: 4.6
Sequence: GATTTTCTAAAAATT
Locus tag: B14911_20458
B14911_20458 -182 4.5 TATATTATAAAAATT
-94 4.6 GATTTTCTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpr
Ortholog function: Transcriptional repressor of sporulation and extracellular protein, MarR family
Bacillus subtilis subsp. subtilis str. 168 BSU09990 -90 4.4 ATTTATTAAAAAATT
Bacillus licheniformis DSM 13 BLi01078 -93 4.7 ATTTTTTAAAAAATT
Anoxybacillus flavithermus WK1 Aflv_2290 -87 4.4 ATTTATTAAAAAATT
Bacillus halodurans C-125 BH1185 -148 4.7 ATTTTTTAAAAAATT
Position: -30
Score: 4.9
Sequence: TATTATCAGAAAATT
Locus tag: B14911_09392
B14911_09392 -30 4.9 TATTATCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Conserved hypothetical protein
Bacillus licheniformis DSM 13 BLi03391 -35 4.9 TATTATCAGAAAATT
Position: -80
Score: 4.8
Sequence: AATTTTTTGACTATT
Locus tag: B14911_22617
B14911_22617 -80 4.8 AATTTTTTGACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvA
Ortholog function: Threonine dehydratase biosynthetic (EC 4.3.1.19)
Bacillus subtilis subsp. subtilis str. 168 BSU21770 -68 4.8 TATTTTTTGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_019920 -75 4.4 AATTGTCTTATTATT
-67 4.5 TATTATTTGAATATT
Bacillus pumilus SAFR-032 BPUM_1911 -64 4.8 TATTTTTTGAATATT
Bacillus licheniformis DSM 13 BLi02315 -97 4.6 AATATTCTGTAAATA
Anoxybacillus flavithermus WK1 Aflv_1453 -99 5 ATTTTTTAGAAAATT
Position: -191
Score: 5
Sequence: AATTTTCAAAAAATA
Locus tag: B14911_05676
B14911_05676 -191 5 AATTTTCAAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3439
Ortholog function: Sodium/proline symporter
Bacillus licheniformis DSM 13 BLi03425 -56 5 AATTATTAGAAAATT
Anoxybacillus flavithermus WK1 Aflv_2428 -166 4.5 ATTTTTTAAAATATT
Bacillus cereus ATCC 14579 BC4071 -70 4.5 AATTTATTGATAATT
Bacillus halodurans C-125 BH3439 -240 4.5 AATTTTCGAAAAATA
-62 5 AATTTTCTGAATATA
Bacillus clausii KSM-K16 ABC1961 -101 4.6 TTTTTTCAGAAAATA
Position: -144
Score: 4.4
Sequence: AATTTTAATAAATTT
Locus tag: B14911_05841
B14911_05841 -144 4.4 AATTTTAATAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadN
Ortholog function: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Bacillus amyloliquefaciens FZB42 RBAM_029920 -132 4.5 AAATTTAAAAAAATT
Bacillus licheniformis DSM 13 BLi03466 -132 4.4 AAAATTCAGAAATTT
Bacillus cereus ATCC 14579 BC5004 -141 4.5 TTATTTCAGAAAATT
Bacillus halodurans C-125 BH3488 -134 4.8 AATTTTCAGAAAATC
Position: -85
Score: 4.5
Sequence: TAATATCTGAAAATT
Locus tag: B14911_15585
B14911_15585 -85 4.5 TAATATCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutP
Ortholog function: L-lactate permease
Anoxybacillus flavithermus WK1 Aflv_2011 -121 4.4 AAATTTTTAAATATT
Bacillus halodurans C-125 BH1831 -123 4.4 ATTTATCAGTAAATT
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