Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ybbF gene

Properties
Regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Built upon 445 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Bacillus licheniformis DSM 13
Position: -53
Score: 4.84058
Sequence: AATATACTGAAAATT
Locus tag: BLi00191
Name: murQ
Funciton: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
Locus tag: BLi00190
Name: murR
Funciton: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family
Locus tag: BLi00189
Name: ybbF
Funciton: PTS system, IIB component (EC 2.7.1.69) / PTS system, IIC component (EC 2.7.1.69)
Locus tag: BLi00188
Name: amiE
Funciton: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides
Locus tag: BLi00187
Name: nagZ
Funciton: Beta--N-acetylglucosaminidase
Locus tag: BLi00186
Name: ybbC
Funciton: Hypothetical protein
murQ-murR-ybbF-amiE-nagZ-ybbC -53 4.8 AATATACTGAAAATT BLi00191
Bacillus pumilus SAFR-032
Position: -131
Score: 4.53832
Sequence: TATTTTCTAACTATT
Locus tag: BPUM_0158
Name: murQ
Funciton: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
Locus tag: BPUM_0157
Name: murR
Funciton: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family
Locus tag: BPUM_0156
Name: ybbF
Funciton: PTS system, IIB component (EC 2.7.1.69) / PTS system, IIC component (EC 2.7.1.69)
Locus tag: BPUM_0155
Name: amiE
Funciton: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides
Locus tag: BPUM_0154
Name: nagZ
Funciton: Beta--N-acetylglucosaminidase
Locus tag: BPUM_0153
Name: ybbC
Funciton: Hypothetical protein
murQ-murR-ybbF-amiE-nagZ-ybbC -131 4.5 TATTTTCTAACTATT BPUM_0158
Bacillus subtilis subsp. subtilis str. 168
Position: -95
Score: 4.41137
Sequence: AAATTTCAAAAATTT
Position: -48
Score: 4.63545
Sequence: AATATACTGAATATT
Locus tag: BSU01700
Name: murQ
Funciton: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
Locus tag: BSU01690
Name: murR
Funciton: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family
Locus tag: BSU01680
Name: ybbF
Funciton: PTS system, IIB component (EC 2.7.1.69) / PTS system, IIC component (EC 2.7.1.69)
Locus tag: BSU01670
Name: amiE
Funciton: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides
Locus tag: BSU01660
Name: nagZ
Funciton: Beta--N-acetylglucosaminidase
Locus tag: BSU01650
Name: ybbC
Funciton: Hypothetical protein
murQ-murR-ybbF-amiE-nagZ-ybbC -95 4.4 AAATTTCAAAAATTT BSU01700
-48 4.6 AATATACTGAATATT