Propagation of CodY regulog to Lysinibacillus sphaericus C3-41

Reference regulog properties
Source regulog:	CodY - Bacillales
Regulator type:	Transcription factor
Regulator family:	CodY
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Guanosine triphosphate; Branched-chain amino acids
Phylum:	Firmicutes
Propagated regulon:
Target genome	Lysinibacillus sphaericus C3-41
Orthologous TF(s)	Bsph_1546
Regulated genes	39

Built upon 445 sites [see more]

Predicted regulatory interactions in *Lysinibacillus sphaericus C3-41*
	Locus tag	Position	Score	Sequence
Position: -146 Score: 5 Sequence: ATTTTTTAGAAAATT Locus tag: Bsph_0068
	Bsph_0068	-146	5	ATTTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spoVG
Ortholog function: Stage V sporulation protein G required for spore cortex synthesis
Bacillus subtilis subsp. subtilis str. 168	BSU00490	-98	4.4	TTTTTTCAAAAAATA
Geobacillus kaustophilus HTA426	GK0042	-96	4.6	AATTTATAAAAAATT
Bacillus cereus ATCC 14579	BC0053	-87	5.1	AATTTTTAAAAAATT

Position: -208 Score: 5 Sequence: AATAGTCAGAAAATT Locus tag: Bsph_0186
	Bsph_0186	-208	5	AATAGTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: Nitrogen regulatory protein P-II
Bacillus licheniformis DSM 13	BLi01176	-103	5	ATTTTTTTGAAAATT
Oceanobacillus iheyensis HTE831	OB1212	-113	4.6	AATTTTCTAAAAACA

Position: -96 Score: 4.9 Sequence: AATTATCTGAAAATA Locus tag: Bsph_0316
	Bsph_0316	-96	4.9	AATTATCTGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: appD
Ortholog function: Oligopeptide transport ATP-binding protein (TC 3.A.1.5.1)
Anoxybacillus flavithermus WK1	Aflv_0356	-48	4.7	AATTTTTTGAATTTT
		-26	4.5	TATTTTTTTAATATT
Oceanobacillus iheyensis HTE831	OB2453	-58	4.8	AATTTTCAGTATATT

Position: -35 Score: 4.4 Sequence: AATATTTTTAAAAAT Locus tag: Bsph_0398
	Bsph_0398	-35	4.4	AATATTTTTAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpr
Ortholog function: Transcriptional repressor of sporulation and extracellular protein, MarR family
Bacillus subtilis subsp. subtilis str. 168	BSU09990	-90	4.4	ATTTATTAAAAAATT
Bacillus licheniformis DSM 13	BLi01078	-93	4.7	ATTTTTTAAAAAATT
Anoxybacillus flavithermus WK1	Aflv_2290	-87	4.4	ATTTATTAAAAAATT
Bacillus halodurans C-125	BH1185	-148	4.7	ATTTTTTAAAAAATT

Position: -229 Score: 4 Sequence: TATATTAATAAAAAT Position: -168 Score: 4.4 Sequence: TATATTCTGAAAAAA Locus tag: Bsph_0718
	Bsph_0718	-229	4	TATATTAATAAAAAT
		-168	4.4	TATATTCTGAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutH
Ortholog function: Histidine ammonia-lyase (EC 4.3.1.3)
Bacillus subtilis subsp. subtilis str. 168	BSU39350	-25	4.1	AGTTATCAGAATTTT
Bacillus amyloliquefaciens FZB42	RBAM_036410	-36	4.5	AGTTATCAGAATATT
Bacillus cereus ATCC 14579	BC3652	-36	4.8	AATATTCAAATAATT

Position: -68 Score: 4.2 Sequence: ATATATCTGAATATT Position: -59 Score: 4 Sequence: AATATTCAGTTTAAT Locus tag: Bsph_0719
	Bsph_0719	-68	4.2	ATATATCTGAATATT
		-59	4	AATATTCAGTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutU
Ortholog function: Urocanate hydratase (EC 4.2.1.49)
Bacillus subtilis subsp. subtilis str. 168	BSU39360	-25	4.1	AGTTATCAGAATTTT
Bacillus amyloliquefaciens FZB42	RBAM_036420	-36	4.5	AGTTATCAGAATATT
Geobacillus kaustophilus HTA426	GK1367	-102	4.3	AAAATTCAAAAAAAT
Bacillus cereus ATCC 14579	BC3651	-36	4.8	AATATTCAAATAATT

Position: -85 Score: 4.8 Sequence: AATTTACTAAAAATT Locus tag: Bsph_0932
	Bsph_0932	-85	4.8	AATTTACTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvA
Ortholog function: Threonine dehydratase biosynthetic (EC 4.3.1.19)
Bacillus subtilis subsp. subtilis str. 168	BSU21770	-68	4.8	TATTTTTTGAATATT
Bacillus amyloliquefaciens FZB42	RBAM_019920	-75	4.4	AATTGTCTTATTATT
		-67	4.5	TATTATTTGAATATT
Bacillus pumilus SAFR-032	BPUM_1911	-64	4.8	TATTTTTTGAATATT
Bacillus licheniformis DSM 13	BLi02315	-97	4.6	AATATTCTGTAAATA
Anoxybacillus flavithermus WK1	Aflv_1453	-99	5	ATTTTTTAGAAAATT

Position: -117 Score: 4.6 Sequence: ATTTGTCAGACAATT Locus tag: Bsph_1479
	Bsph_1479	-117	4.6	ATTTGTCAGACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppB
Ortholog function: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Bacillus subtilis subsp. subtilis str. 168	BSU11440	-116	4.3	AATAATCAGAAAAGA
Bacillus amyloliquefaciens FZB42	RBAM_011440	-115	4.3	AATAATCAGAAAAGA
Bacillus licheniformis DSM 13	BLi01233	-30	4.3	AATAGACTGAATATT

Position: -143 Score: 4.9 Sequence: TTTTTTCTGAAAATT Locus tag: Bsph_2259
	Bsph_2259	-143	4.9	TTTTTTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutA
Ortholog function: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
Bacillus pumilus SAFR-032	BPUM_1672	-103	4.6	AAATTTCAGAAATTT
Bacillus cereus ATCC 14579	BC1303	-165	4.5	AATCTTTTAAAAATT
		-149	4.6	AATTTTCTGATAAAA
Bacillus halodurans C-125	BH1832	-123	4.4	ATTTATCAGTAAATT

Position: 9 Score: 4.4 Sequence: AATATTCCGAAAAAT Locus tag: Bsph_3026
	Bsph_3026	9	4.4	AATATTCCGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metA
Ortholog function: Homoserine O-succinyltransferase (EC 2.3.1.46)
Anoxybacillus flavithermus WK1	Aflv_1464	-51	5.3	AATTTTCTAAAAATT
Oceanobacillus iheyensis HTE831	OB0438	-89	4.4	AATTTTTAGATAAAA

Position: -73 Score: 4.2 Sequence: AATTATGTGAATATA Locus tag: Bsph_3234
	Bsph_3234	-73	4.2	AATTATGTGAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutG
Ortholog function: Formiminoglutamase (EC 3.5.3.8)
Bacillus subtilis subsp. subtilis str. 168	BSU39380	-25	4.1	AGTTATCAGAATTTT
Bacillus amyloliquefaciens FZB42	RBAM_036440	-36	4.5	AGTTATCAGAATATT

Position: -321 Score: 4.7 Sequence: TATTTTAAAAAAATT Locus tag: Bsph_3390
	Bsph_3390	-321	4.7	TATTTTAAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Bacillus subtilis subsp. subtilis str. 168	BSU21870	-64	4.5	AATAAACTGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_020010	-56	4.5	AATAAACTGAAAATT
Bacillus pumilus SAFR-032	BPUM_1922	-83	4.5	AATAAACAGAAAATT
Bacillus licheniformis DSM 13	BLi02324	-51	4.8	AATATTCAGAATATA
Bacillus halodurans C-125	BH3062	-217	4.3	AATAGTCAAATTATT
		-111	4.5	TATTTTTTGACTATT

Position: -128 Score: 4.3 Sequence: AATTTTCTGAAATCA Locus tag: Bsph_3397
	Bsph_3397	-128	4.3	AATTTTCTGAAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168	BSU11870	-297	4.6	AATTATTAGAAATTT
		-214	4.3	AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_011930	-314	4.6	AATTATTAGAAATTT
Bacillus pumilus SAFR-032	BPUM_1119	-297	4.4	AAAATACAGAAAATT
		-287	4.1	AAATTTCAATTAATT
Bacillus licheniformis DSM 13	BLi01289	-164	4	AACAATCAGAATATT
Anoxybacillus flavithermus WK1	Aflv_2067	-228	4.4	ATTTTTCGGAAAATA
		-200	4.6	AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426	GK0866	-341	4.5	AAATTTAAAAAAATT
Bacillus cereus ATCC 14579	BC4253	-344	4.4	AATTTTTTAATAAAT
Paenibacillus sp. JDR-2	Pjdr2_4798	-6	4.4	AACTTTATGAAAATT

Position: -87 Score: 4.3 Sequence: AATAATTAGATTATT Locus tag: Bsph_3415
	Bsph_3415	-87	4.3	AATAATTAGATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqjP
Ortholog function: Zinc metallohydrolase, metallo-beta-lactamase family (EC 3.5.2.6)
Anoxybacillus flavithermus WK1	Aflv_0983	-117	4.6	TATTTTCTGAATTTT
		-108	4.4	AATTTTTTAATAAAT
Bacillus cereus ATCC 14579	BC4133	-90	4.3	TTTTATCTGAAAATA

Position: -194 Score: 4.3 Sequence: AATATTAAGAATTTT Locus tag: Bsph_3670
	Bsph_3670	-194	4.3	AATATTAAGAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Bacillus amyloliquefaciens FZB42	RBAM_010260	-75	4.4	AAAAATCAAAAAATT
Anoxybacillus flavithermus WK1	Aflv_2293	-91	4.5	TATTTTTTAAAAAAT
		-90	4.7	ATTTTTTAAAAAATT

Position: -183 Score: 5.2 Sequence: AATTTTCTTAAAATT Locus tag: Bsph_4054
	Bsph_4054	-183	5.2	AATTTTCTTAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase, cytochrome b subunit
Bacillus amyloliquefaciens FZB42	RBAM_025520	-98	4.5	AATTGTCAATAAATT
Bacillus pumilus SAFR-032	BPUM_2503	-161	4.5	AAATTTCGGAAAATT
		-94	4.5	AATTGTCAATAAATT
Bacillus licheniformis DSM 13	BLi02994	-184	4.5	AATTTTCAAAAATAT
		-165	4.9	AAATTTTAGAAAATT

Position: -34 Score: 5.2 Sequence: AATTTTAAGAAAATT Locus tag: Bsph_4055
	Bsph_4055	-34	5.2	AATTTTAAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yslB
Ortholog function: Predicted hydrocarbon binding protein (V4R domain)
Bacillus amyloliquefaciens FZB42	RBAM_025530	-213	4.5	AATTTATTGACAATT
Bacillus pumilus SAFR-032	BPUM_2504	-201	4.5	AATTTATTGACAATT
		-134	4.5	AATTTTCCGAAATTT
Bacillus licheniformis DSM 13	BLi02995	-151	4.9	AATTTTCTAAAATTT
		-132	4.5	ATATTTTTGAAAATT

Position: -89 Score: 4.7 Sequence: AATTTTCTGACTAAT Locus tag: Bsph_4233
	Bsph_4233	-89	4.7	AATTTTCTGACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppC
Ortholog function: Oligopeptide ABC transporter permease
Bacillus halodurans C-125	BH0030	-46	4.5	ATTTGTCAAAATATT
Oceanobacillus iheyensis HTE831	OB3067	-112	4.5	TATTTTTACAAAATT

Position: -272 Score: 4.4 Sequence: AATTGTTAGAAAAAA Position: -111 Score: 4.4 Sequence: AATTTAAAGAAAAAT Locus tag: Bsph_4370
	Bsph_4370	-272	4.4	AATTGTTAGAAAAAA
		-111	4.4	AATTTAAAGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclF
Ortholog function: POT family proton (H+)-dependent oligopeptide transporter
Bacillus pumilus SAFR-032	BPUM_0343	-187	4.5	AATTTTAAATAAATT
Geobacillus kaustophilus HTA426	GK2020	-118	4.4	TTTTTTCTTAATATT
		-68	4.4	ATTTTTTTGACAATA

Position: -114 Score: 4.6 Sequence: AATTTTCACAAAAAT Locus tag: Bsph_4372
	Bsph_4372	-114	4.6	AATTTTCACAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter (TC 2.A.21.2.1)
Bacillus subtilis subsp. subtilis str. 168	BSU03220	-106	4.1	AATAATCAGAATCTT
		-89	4.5	TATTTTGAGAATATT
Bacillus amyloliquefaciens FZB42	RBAM_003460	-23	4.8	TATTTTTAGAATATT
Bacillus licheniformis DSM 13	BLi00375	-85	4.5	ATTAGTCTAAAAATT
Geobacillus kaustophilus HTA426	GK3452	-158	4.8	AATTTACAGAATATT
Bacillus cereus ATCC 14579	BC1231	-106	4.6	ACATTTCTGAAAATT
		-76	4.6	ATTTTTCAGAATAAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CodY regulog to Lysinibacillus sphaericus C3-41

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --