Propagation of KdgR regulog to Citrobacter koseri ATCC BAA-895

Reference regulog properties
Source regulog:	KdgR - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Citrobacter koseri ATCC BAA-895
Orthologous TF(s)	CKO_01146
Regulated genes	14

Built upon 159 sites [see more]

Predicted regulatory interactions in *Citrobacter koseri ATCC BAA-895*
	Locus tag	Position	Score	Sequence
Position: -7 Score: 4.9 Sequence: ATTTGAAATGAGGTTTCAACT Locus tag: CKO_00837
	CKO_00837	-7	4.9	ATTTGAAATGAGGTTTCAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeeO
Ortholog function: predicted multidrug efflux system, MATE family
Escherichia coli str. K-12 substr. MG1655	b1985	-7	4.9	ATTTGAAATGTGGTTTCACTT
Salmonella typhimurium LT2	STM2013	-7	5	TATTGAAATGTGGTTTCAACT
Citrobacter koseri ATCC BAA-895	CKO_00837	-7	4.9	ATTTGAAATGAGGTTTCAACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02447	-40	5.1	ATTTGAAATGTTGTTTCAACA
Enterobacter sp. 638	Ent638_2574	-74	5	ATTTGAAATGTAGTTTCAACT
Yersinia pestis KIM	y2593	-158	4.8	TCATGAAACTATGTTCCATTT
Serratia proteamaculans 568	Spro_3106	-39	5.2	ATTTGAAATGTTGTTTCACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2762	-140	5.1	AATAGAAACGTCATTTTAAAA

Position: -190 Score: 5.4 Sequence: AATAGAAACGCTGTTTTATAA Locus tag: CKO_01081
	CKO_01081	-190	5.4	AATAGAAACGCTGTTTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiT
Ortholog function: Rhamnogalacturonide transporter
Citrobacter koseri ATCC BAA-895	CKO_01081	-190	5.4	AATAGAAACGCTGTTTTATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02390	-200	4.9	AAGAGAAATGCTGTTTTATAA
Enterobacter sp. 638	Ent638_2444	-189	5.6	AAAAGAAACGCTGTTTTATAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3560	-167	4.7	AGTTAAAATGCCTTTTTATAA

Position: -107 Score: 5.5 Sequence: TATAAAAATAGCGTTTCATTT Locus tag: CKO_01727
	CKO_01727	-107	5.5	TATAAAAATAGCGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsR
Ortholog function: PEP synthetase regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1703	-131	5.3	AAATGAAATGCTGTTTTCATA
Salmonella typhimurium LT2	STM1348	-131	4.9	AAATGAAACACACTTTTCATT
Citrobacter koseri ATCC BAA-895	CKO_01727	-107	5.5	TATAAAAATAGCGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02161	-97	5.1	AACAAAAATAGCGTTTCAATT
Enterobacter sp. 638	Ent638_1744	-107	5.3	ATTAAAAACACCATTTCATTT
Serratia proteamaculans 568	Spro_2173	-134	5.2	ATTTGAAATAGTGTTTTACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1852	-94	5.6	TAATGAAATGGCGTTTTAATA

Position: -99 Score: 5.9 Sequence: TTATAAAACACTGTTTCATTT Locus tag: CKO_01753
	CKO_01753	-99	5.9	TTATAAAACACTGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduD2
Ortholog function: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Citrobacter koseri ATCC BAA-895	CKO_01753	-99	5.9	TTATAAAACACTGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01240	-104	5.8	AATCAAAACATTGTTTCATTT
Enterobacter sp. 638	Ent638_1716	-94	5.6	TTTTAAAACATCATTTCATTT

Position: -147 Score: 5.6 Sequence: AAATGAAACATAGTTTTGTTA Locus tag: CKO_03092
	CKO_03092	-147	5.6	AAATGAAACATAGTTTTGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgT
Ortholog function: 2-keto-3-deoxygluconate permease
Escherichia coli str. K-12 substr. MG1655	b3909	-140	6	AAATAAAACAGCGTTTCAATT
Citrobacter koseri ATCC BAA-895	CKO_03092	-147	5.6	AAATGAAACATAGTTTTGTTA

Position: -33 Score: 6.2 Sequence: AAATGAAACGTTGTTTTATTT Locus tag: CKO_03553
	CKO_03553	-33	6.2	AAATGAAACGTTGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655	b4252	-35	6	AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2	STM4468	-32	5.7	AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895	CKO_03553	-33	6.2	AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04658	-33	5.8	AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638	Ent638_0453	-34	6	AAATGAAACATTGTTTTATAT
Yersinia pestis KIM	y0739	-41	5.9	TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0383	-41	5.1	TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202	ETAE_3112	-39	5.6	AAATAAAACGCAGTTTTATAA

Position: -31 Score: 5.2 Sequence: AAATAAAACATTATTTCAAAG Locus tag: CKO_03627
	CKO_03627	-31	5.2	AAATAAAACATTATTTCAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgX
Ortholog function: predicted 2-keto-3-deoxygluconate permease
Salmonella typhimurium LT2	STM4395	-34	5.8	AAATAAAACATTATTTTAATT
Citrobacter koseri ATCC BAA-895	CKO_03627	-31	5.2	AAATAAAACATTATTTCAAAG
Enterobacter sp. 638	Ent638_0375	-33	5.9	AATTGAAACGTCATTTTATTT
Yersinia pestis KIM	y1734	-22	5.8	TAACGAAACATCATTTCATTT

Position: -121 Score: 5.1 Sequence: AACAGAAACGTTGTTTCATTC Locus tag: CKO_03830
	CKO_03830	-121	5.1	AACAGAAACGTTGTTTCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjcB
Ortholog function: putative inner membrane protein
Salmonella typhimurium LT2	STM4263	-120	5.4	AATAGAAACAATGTTTCATTC
Citrobacter koseri ATCC BAA-895	CKO_03830	-121	5.1	AACAGAAACGTTGTTTCATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04460	-113	4.9	AACAGAAATGGCGTTTCATCA

Position: -38 Score: 5.6 Sequence: AGTTGAAACATTGTTTCAATA Locus tag: CKO_04218
	CKO_04218	-38	5.6	AGTTGAAACATTGTTTCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895	CKO_04218	-38	5.6	AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03255	-39	5.8	AAATGAAACAATGTTTCACTT
Enterobacter sp. 638	Ent638_3287	-38	5.5	AATTAAAACAATGTTTCACTA
Yersinia pestis KIM	y1888	-155	6	AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2399	-174	6.1	AAATGAAATAATGTTTTATTT

Position: -138 Score: 5.1 Sequence: TTTTAAACCATCGTTTCAATT Position: -50 Score: 4.8 Sequence: AACTAAAACAATGTTTTAACG Locus tag: CKO_04899
	CKO_04899	-138	5.1	TTTTAAACCATCGTTTCAATT
		-50	4.8	AACTAAAACAATGTTTTAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiA
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Citrobacter koseri ATCC BAA-895	CKO_04899	-138	5.1	TTTTAAACCATCGTTTCAATT
		-50	4.8	AACTAAAACAATGTTTTAACG
Enterobacter sp. 638	Ent638_3876	-134	4.5	TTTCAAACCATCGTTTCAAAA
		-49	4.8	AACTAAAACAACGTTTTAACG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0357	-239	5.6	ATATAAAACAGCATTTCATAT

Position: -87 Score: 5.3 Sequence: TAATGGAACGATGTTTTAATA Locus tag: CKO_04968
	CKO_04968	-87	5.3	TAATGGAACGATGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Salmonella typhimurium LT2	STM3612	-85	4.9	TAATGGACCGATGTTTTAATA
Citrobacter koseri ATCC BAA-895	CKO_04968	-87	5.3	TAATGGAACGATGTTTTAATA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of KdgR regulog to Citrobacter koseri ATCC BAA-895

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --