Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Citrobacter koseri ATCC BAA-895

Type Regulator Effector Pathway Genes Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AgaR N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate N-acetylgalactosamine utilization 3 4
TF AlsR D-allose Allose utilization 1 1
TF AraC Arabinose Arabinose utilization 2 3
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 10 16
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 2 2
TF BetI Choline Glycine betaine synthesis 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 249 554
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Deoxyribonucleoside utilization 2 2
TF ExuR Galacturonate Galacturonate utilization 8 15
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 8 11
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 88 155
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 14 16
TF FucR L-fuculose-1-phosphate Fucose utilization 3 3
TF Fur Iron ion, (Fe2+) Iron homeostasis 57 192
TF GalR/GalS Galactose Galactose utilization 6 8
TF GcvA Glycine Glycine metabolism 1 1
TF GlpR Glycerol 3-phosphate Glycerol utilization 4 6
TF GntR Gluconate Gluconate utilization 3 5
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 2 2
TF HutC cis-Urocanic acid Histidine utilization 3 3
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 3
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 14 16
TF LacI Allolactose Lactose utilization 1 1
TF LexA DNA damage SOS response 19 23
TF LfaR Sugar utilization 2 2
TF LldR L-lactate Lactate utilization 1 1
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MarR Salicylate; Tetracycline; Chloramphenicol Antibiotic resistance 1 2
TF MetR Homocysteine Methionine biosynthesis 5 10
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 3 3
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 6 7
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 2 4
TF NadR NAD NAD biosynthesis 2 2
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 3 5
TF NanR N-acetylneuraminic acid Sialic acid utilization 1 1
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 22 27
TF NhaR Potassium ion Osmotic stress response 1 1
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 1 1
TF NorR Nitric oxide Nitrosative stress response 2 4
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 4 10
TF NsrR Nitric oxide Nitrosative stress response 10 14
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 8 16
TF PdhR Pyruvate Pyruvate metabolism 3 3
TF PhnF Phosphonate utilization 1 1
TF PurR Hypoxanthine; Guanine Purine metabolism 19 25
TF QorR Energy metabolism 2 2
TF RbsR Ribose Ribose utilization 1 1
TF RhaR Rhamnose Rhamnose utilization 2 2
TF RhaS Rhamnose Rhamnose utilization 4 4
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 1 1
TF SoxR Paraquat Superoxide stress response 2 2
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 5 5
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 9 15
TF UlaR Ascorbate-6-phosphate Ascorbate utilization 1 1
TF UxuR Glucuronate Glucuronate utilization 3 8
TF XapR Deoxyinosine; Xanthosine Xanthosine utilization 1 1
TF YiaJ Ascorbate-6-phosphate L-lyxose utilization 2 2
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 11 12
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