Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ExuR regulog to Citrobacter koseri ATCC BAA-895

Reference regulog properties
Source regulog: ExuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Galacturonate utilization
Effector: Galacturonate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Citrobacter koseri ATCC BAA-895
Orthologous TF(s) CKO_04496
Regulated genes 8
Built upon 48 sites [see more]
Predicted regulatory interactions in Citrobacter koseri ATCC BAA-895
Locus tag Position Score Sequence
Position: -191
Score: 4.4
Sequence: AAGTTGTTATACCAAATTA
Position: -63
Score: 3.8
Sequence: AATTTGGTGTCATATAACT
Locus tag: CKO_00608
CKO_00608 -191 4.4 AAGTTGTTATACCAAATTA
-63 3.8 AATTTGGTGTCATATAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuB
Ortholog function: D-mannonate oxidoreductase (EC 1.1.1.57)
Citrobacter koseri ATCC BAA-895 CKO_00608 -191 4.4 AAGTTGTTATACCAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02605 -193 3.7 AAAGTtGTtatACcAaTaa
Enterobacter sp. 638 Ent638_2768 -193 3.8 AAAGTtGTtatACcAaTaT
Yersinia pestis KIM y2903 -91 5.3 AAACTGGTCTAACAACTTT
Serratia proteamaculans 568 Spro_3239 -64 5.3 AAACTGGTCTGATAACTTC
Edwardsiella tarda EIB202 ETAE_2291 -89 4.7 CAAGTGGTCTAACACCTTT
Position: -31
Score: 5.3
Sequence: AATTTGGTATAACAACTTG
Locus tag: CKO_00609
CKO_00609 -31 5.3 AATTTGGTATAACAACTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Citrobacter koseri ATCC BAA-895 CKO_00609 -31 5.3 AATTTGGTATAACAACTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02604 -34 5.5 TTATTGGTATAACAACTTT
Enterobacter sp. 638 Ent638_2767 -32 5.7 ATATTGGTATAACAACTTT
Yersinia pestis KIM y2902 -240 5.2 AAATCGGTATAACAACATT
Serratia proteamaculans 568 Spro_3238 -80 5 AATTTGGTATAACAAGATT
Edwardsiella tarda EIB202 ETAE_2289 -101 4.7 GATTTGGTATGACAGATTA
Position: -34
Score: 4.5
Sequence: CAGGTTGTATGACTAATTA
Locus tag: CKO_01541
CKO_01541 -34 4.5 CAGGTTGTATGACTAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaB
Ortholog function: Altronate oxidoreductase (EC 1.1.1.58)
Escherichia coli str. K-12 substr. MG1655 b1521 -33 4.3 CAGGTTGTATGACTAATCA
Citrobacter koseri ATCC BAA-895 CKO_01541 -34 4.5 CAGGTTGTATGACTAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01640 -34 4.3 CAGGTTGTATGACTACTAT
Yersinia pestis KIM y3599 -69 6 TAATTGGTGTGATAACTTT
Edwardsiella tarda EIB202 ETAE_0437 -69 6.1 AAATTGGTGTGATAACTTC
Position: -157
Score: 5.8
Sequence: TAAGTTGTGTGACAAGTTC
Locus tag: CKO_02295
CKO_02295 -157 5.8 TAAGTTGTGTGACAAGTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaR
Ortholog function: putative transcriptional regulator, LacI family
Citrobacter koseri ATCC BAA-895 CKO_02295 -157 5.8 TAAGTTGTGTGACAAGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -195 4.5 TCATTGGTATAACTAGTAT
Enterobacter sp. 638 Ent638_1314 -175 5.6 GAAGTTGTGTGACAAGTTC
Serratia proteamaculans 568 Spro_3600 -196 4.8 TAATTGGACTGATAAATCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -176 4.8 AAATTGGTTTACCAAATTG
Position: -59
Score: 4.6
Sequence: AAATTTGTGTGACACCAAA
Locus tag: CKO_02296
CKO_02296 -59 4.6 AAATTTGTGTGACACCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaT
Ortholog function: Putative MFS superfamily hexuronate transporter
Citrobacter koseri ATCC BAA-895 CKO_02296 -59 4.6 AAATTTGTGTGACACCAAA
Enterobacter sp. 638 Ent638_1313 -60 4.4 TAATCTGTGTGACAACCGA
Serratia proteamaculans 568 Spro_3599 -209 5.2 GAATTGGTATACCAACTTT
Position: -8
Score: 6.2
Sequence: AAATTGGTGTGATAACTTT
Locus tag: CKO_04494
CKO_04494 -8 6.2 AAATTGGTGTGATAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Escherichia coli str. K-12 substr. MG1655 b3092 -71 6.2 AAATTGGTGTGATAACTTT
Citrobacter koseri ATCC BAA-895 CKO_04494 -8 6.2 AAATTGGTGTGATAACTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03520 -90 6.2 AAATTGGTGTGATAACTTT
Enterobacter sp. 638 Ent638_3546 -70 6.2 AAATTGGTGTGATAACTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0645 -67 5.4 TAATTGGTGTGATATCTTT
Position: -227
Score: 5.7
Sequence: GAAGTTGTATGACAAGTTA
Locus tag: CKO_04495
CKO_04495 -227 5.7 GAAGTTGTATGACAAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuT
Ortholog function: Hexuronate transporter
Escherichia coli str. K-12 substr. MG1655 b3093 -129 6.2 AAAGTTGTATGACAAGTTA
Citrobacter koseri ATCC BAA-895 CKO_04495 -227 5.7 GAAGTTGTATGACAAGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03521 -240 6.2 AAAGTTGTATGACAAGTTA
Enterobacter sp. 638 Ent638_3547 -116 6.2 AAAGTTGTATGACAAGTTA
Yersinia pestis KIM y3601 -515 5.6 AAAtctGTATGACAAgTTa
Serratia proteamaculans 568 Spro_4322 -157 5.6 AAATCTGTATGACAAGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0644 -185 6.2 AAAGTTGTATGACAAATTA
Edwardsiella tarda EIB202 ETAE_0435 -282 5.2 GAATCTGTATGACAAGTTA
Position: -47
Score: 6
Sequence: AAAGTGGTATAACAAATAT
Locus tag: CKO_04496
CKO_04496 -47 6 AAAGTGGTATAACAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuR
Ortholog function: D-galacturonate transcriptional repressor, GntR family
Escherichia coli str. K-12 substr. MG1655 b3094 -47 6 AAAGTGGTATAACAAATAT
Citrobacter koseri ATCC BAA-895 CKO_04496 -47 6 AAAGTGGTATAACAAATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03522 -48 5.8 AAAGTGGTATAACAAATCG
Enterobacter sp. 638 Ent638_3548 -45 6.1 AAAGTGGTATAACAAATCA
Yersinia pestis KIM y3602 -105 5.8 TAAGTGGTATAACAAATCC
Serratia proteamaculans 568 Spro_4323 -57 5.8 TAAGTGGTATAACAAATCC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0643 -98 5.9 TAAGTGGTATAACAAATCA
Edwardsiella tarda EIB202 ETAE_0434 -68 5.8 AAAGTGGTATAACAACTCG
© 2009-2020 RegPrecise