Propagation of Fnr regulog to Erwinia carotovora subsp. atroseptica SCRI1043
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Erwinia carotovora subsp. atroseptica SCRI1043 |
| Orthologous TF(s) | ECA2207 |
| Regulated genes | 82 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -140
Score: 4 Sequence: TTGATTTATATTGA
Locus tag: ECA0048
|
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| ECA0048 | -140 | 4 | TTGATTTATATTGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pitA | ||||
| Ortholog function: Phosphate transporter, low-affinity | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0048 | -140 | 4 | TTGATTTATATTGA |
| Escherichia coli str. K-12 substr. MG1655 | b3493 | -116 | 3.8 | TTGAGTGAAATCCA |
| Salmonella typhimurium LT2 | STM3589 | -116 | 4.2 | GTGATATCAAACAA |
| Yersinia pestis KIM | y3862 | -201 | 4.1 | TTGAATAAAATCAT |
|
Position: -232
Score: 4.7 Sequence: TTGTTATATAACAA
Position: 31
Score: 4 Sequence: TTGATTCTGTTCAA
Locus tag: ECA0051
|
||||
| ECA0051 | -232 | 4.7 | TTGTTATATAACAA | |
| 31 | 4 | TTGATTCTGTTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gdhA | ||||
| Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0051 | -232 | 4.7 | TTGTTATATAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b1761 | -397 | 3.9 | TTGATCCTGATAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0122 | -272 | 4 | ATGATGAATGACAA |
| Proteus mirabilis HI4320 | PMI3008 | -176 | 3.6 | TTTAGTGAGGTCAA |
| Salmonella typhimurium LT2 | STM1299 | -51 | 3.4 | CTGATAAAACGCAA |
| Yersinia pestis KIM | y3858 | -231 | 3.6 | TTGAGTAACGTTAA |
|
Position: -16
Score: 4.2 Sequence: TTTAGATATATCAA
Locus tag: ECA0068
|
||||
| ECA0068 | -16 | 4.2 | TTTAGATATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ECA0068 | ||||
| Ortholog function: Transcriptional regulator, LysR family | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03849 | -6 | 4 | TTGATTATGCACAA |
|
Position: -143
Score: 3.5 Sequence: ATGAAGTAAAGCAA
Locus tag: ECA0092
|
||||
| ECA0092 | -143 | 3.5 | ATGAAGTAAAGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Enterobacter sp. 638 | Ent638_4063 | -132 | 3.6 | ATGATACAAAAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -143 | 3.5 | ATGAAGTAAAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -146 | 4.2 | TTGTTCTACATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -346 | 3.6 | TTATGTCAAATCAA |
| Proteus mirabilis HI4320 | PMI3036 | -164 | 3.8 | TTTATTTAAAATAA |
| -85 | 4 | ATGATTTTCATTAA | ||
|
Position: -155
Score: 3.8 Sequence: GTGACTTAAATCAC
Locus tag: ECA0184
|
||||
| ECA0184 | -155 | 3.8 | GTGACTTAAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ysgA | ||||
| Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00172 | -133 | 4.1 | GTGATTTACATCAC |
| Erwinia amylovora ATCC 49946 | EAM_0199 | -199 | 3.6 | TTAATCAAAATGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0184 | -155 | 3.8 | GTGACTTAAATCAC |
| Salmonella typhimurium LT2 | STM3967 | -169 | 4.2 | ATGACGTAAAACAA |
| Serratia proteamaculans 568 | Spro_0243 | -174 | 3.8 | TTAATGCAGGTCAA |
| Yersinia pestis KIM | y0443 | -296 | 4.2 | GTGATTTAAATCAC |
|
Position: -70
Score: 3.7 Sequence: TTGATCGCGGTCAT
Locus tag: ECA0313
|
||||
| ECA0313 | -70 | 3.7 | TTGATCGCGGTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcC | ||||
| Ortholog function: COG1242: Predicted Fe-S oxidoreductase | ||||
| Enterobacter sp. 638 | Ent638_3655 | -65 | 3.7 | TTTATTCAAATGAA |
| -32 | 4 | TTGATCCAGGTCAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0313 | -70 | 3.7 | TTGATCGCGGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b3211 | -75 | 4 | TTGATCCAGGTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03623 | -75 | 4 | TTGATCCAGGTCAT |
| Salmonella typhimurium LT2 | STM3329 | -75 | 4 | TTGATCCAGGTCAT |
| Serratia proteamaculans 568 | Spro_4343 | -74 | 4.2 | TTGATCTCTGTCAT |
| Yersinia pestis KIM | y0127 | -133 | 4.2 | TTGATCTCTGTCAT |
|
Position: -182
Score: 4.8 Sequence: TTGCTCTACATCAA
Locus tag: ECA0375
|
||||
| ECA0375 | -182 | 4.8 | TTGCTCTACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03580 | -235 | 4.2 | TTGATGCAAATCAC |
| Edwardsiella tarda EIB202 | ETAE_0423 | -196 | 4.7 | TTGATTCAGGTCAA |
| Enterobacter sp. 638 | Ent638_0437 | -244 | 4.7 | TTGTTCTGAATCAA |
| -213 | 4.2 | TTGATGCAAATCAC | ||
| Erwinia amylovora ATCC 49946 | EAM_3059 | -106 | 4.2 | TTGCTTCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0375 | -182 | 4.8 | TTGCTCTACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4238 | -249 | 4.8 | TTGAGCTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04646 | -248 | 4.2 | TTGTTCTGGGTCAA |
| -217 | 4.2 | TTGATGCAAATCAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4499 | -160 | 4.7 | TTGTTTCAGATCAA |
| Proteus mirabilis HI4320 | PMI3451 | -184 | 4.9 | TTGATTTAGATCAG |
| Salmonella typhimurium LT2 | STM4452 | -249 | 5 | TTGTTCTACATCAA |
| -218 | 4.2 | TTGATGCAAATCAC | ||
| Serratia proteamaculans 568 | Spro_0525 | -217 | 4.7 | TTGTTCTACGTCAA |
| Yersinia pestis KIM | y0733 | -192 | 4.6 | TTGTTCTAGGTCAA |
|
Position: -345
Score: 3.6 Sequence: ATGATTTAGTTAAA
Position: -288
Score: 4 Sequence: TTGTTCTAAAATAA
Locus tag: ECA0621
|
||||
| ECA0621 | -345 | 3.6 | ATGATTTAGTTAAA | |
| -288 | 4 | TTGTTCTAAAATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aspA | ||||
| Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_0311 | 19 | 3.5 | TTGAAGAAGATCTA |
| Enterobacter sp. 638 | Ent638_0326 | -184 | 3.6 | TTAATAATTATCAT |
| Erwinia amylovora ATCC 49946 | EAM_0416 | -194 | 4 | TTGATATAACACGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0621 | -288 | 4 | TTGTTCTAAAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04529 | 0 | 3.5 | ATGTTAAACAACAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4137 | -362 | 4.2 | TTGATTTGGATGAA |
| -198 | 3.8 | ATCACATATATCAA | ||
| Proteus mirabilis HI4320 | PMI2546 | -202 | 3.7 | ATGAGATAGATCAC |
|
Position: -230
Score: 3.3 Sequence: GTGACTAGGGTCAA
Locus tag: ECA0626
|
||||
| ECA0626 | -230 | 3.3 | GTGACTAGGGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ubiC | ||||
| Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40) | ||||
| Erwinia amylovora ATCC 49946 | EAM_0260 | -194 | 3.8 | CTGATATTAGTCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0626 | -230 | 3.3 | GTGACTAGGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4039 | -70 | 3.4 | TTGCTTTACATCTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4378 | -253 | 3.8 | TTATTTTTGGTCAA |
| Proteus mirabilis HI4320 | PMI2753 | -163 | 4.3 | TTGTTTTTTCTCAA |
| Serratia proteamaculans 568 | Spro_4464 | -223 | 3.6 | TTGCTGGAGATCAC |
| Yersinia pestis KIM | y0568 | -253 | 3.3 | CTGATATTTATAAT |
|
Position: -225
Score: 3.9 Sequence: TTGAGTGATATCAC
Locus tag: ECA0645
|
||||
| ECA0645 | -225 | 3.9 | TTGAGTGATATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04494 | -43 | 3.8 | TTGATCCAACTCAC |
| Enterobacter sp. 638 | Ent638_3546 | -105 | 4.2 | TTGATCTAACTCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0645 | -225 | 3.9 | TTGAGTGATATCAC |
| Escherichia coli str. K-12 substr. MG1655 | b3092 | -106 | 4.2 | TTGATCTAACTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03520 | -125 | 4.2 | TTGATCTAACTCAC |
|
Position: 15
Score: 3.4 Sequence: CTGACTAACCACAA
Locus tag: ECA1141
|
||||
| ECA1141 | 15 | 3.4 | CTGACTAACCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoC | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02731 | -267 | 3.7 | TTGTTGATAATTAA |
| Erwinia amylovora ATCC 49946 | EAM_0983 | -207 | 3.7 | GTTATTTAAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0430 | -241 | 3.7 | TTGTTTTATTTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00392 | -49 | 3.7 | TTGAGGTCGTTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3877 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0106 | 9 | 3.6 | ATGAAATACATAAA |
| Salmonella typhimurium LT2 | STM0441 | -268 | 3.4 | TTTATTGATAATAA |
| Serratia proteamaculans 568 | Spro_1088 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1019 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: -98
Score: 4.1 Sequence: TTGTGTCAGATCAA
Locus tag: ECA1236
|
||||
| ECA1236 | -98 | 4.1 | TTGTGTCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfR | ||||
| Ortholog function: Formate hydrogenlyase transcriptional activator | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1236 | -98 | 4.1 | TTGTGTCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2491 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI3580 | -64 | 3.9 | TTGATATAAATTTA |
|
Position: -91
Score: 3.5 Sequence: TTGAATTAAAGAAA
Locus tag: ECA1247
|
||||
| ECA1247 | -91 | 3.5 | TTGAATTAAAGAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfA | ||||
| Ortholog function: Hydrogenase-4 component A (EC 1.-.-.-) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1247 | -91 | 3.5 | TTGAATTAAAGAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2481 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI2528 | -114 | 4.9 | TTGATTTTTAACAA |
|
Position: -198
Score: 4.3 Sequence: CTGATCCAGATCAA
Locus tag: ECA1254
|
||||
| ECA1254 | -198 | 4.3 | CTGATCCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -169
Score: 4.3 Sequence: TTGATCTGGATCAG
Locus tag: ECA1255
|
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| ECA1255 | -169 | 4.3 | TTGATCTGGATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -261
Score: 4 Sequence: GTGATCTAAATCAC
Locus tag: ECA1357
|
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| ECA1357 | -261 | 4 | GTGATCTAAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -81
Score: 3.9 Sequence: TTGATTTTGCGCAA
Locus tag: ECA1408
|
||||
| ECA1408 | -81 | 3.9 | TTGATTTTGCGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdnG | ||||
| Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1408 | -81 | 3.9 | TTGATTTTGCGCAA |
|
Position: -228
Score: 3.3 Sequence: TTGAGTGGTAACAT
Locus tag: ECA1444
|
||||
| ECA1444 | -228 | 3.3 | TTGAGTGGTAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00756 | -337 | 4 | TTGATTACTATCTA |
| Enterobacter sp. 638 | Ent638_2642 | -112 | 3.7 | GTGACATAGATCAG |
| Erwinia amylovora ATCC 49946 | EAM_2150 | -264 | 3.8 | TTCTCTTAAGTCAA |
| -169 | 4 | TTTTTTTTAAACAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1444 | -228 | 3.3 | TTGAGTGGTAACAT |
| Escherichia coli str. K-12 substr. MG1655 | b2029 | -375 | 3.4 | ATGGCTTCGATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02499 | -322 | 3.7 | TTTTTATAGTTCAA |
| Proteus mirabilis HI4320 | PMI0655 | -7 | 3.7 | TTATTTCATGTCAA |
| Serratia proteamaculans 568 | Spro_1608 | -384 | 3.3 | ATTATTTGAATTAA |
|
Position: -279
Score: 3.7 Sequence: TTTATTTTCATGAA
Position: -270
Score: 3.6 Sequence: ATGAAATAGGACAA
Position: -243
Score: 4.5 Sequence: TAGATTTAGATCAA
Position: -100
Score: 3.7 Sequence: ATGAGCTTACTCAA
Locus tag: ECA1533
|
||||
| ECA1533 | -279 | 3.7 | TTTATTTTCATGAA | |
| -270 | 3.6 | ATGAAATAGGACAA | ||
| -243 | 4.5 | TAGATTTAGATCAA | ||
| -100 | 3.7 | ATGAGCTTACTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuB | ||||
| Ortholog function: C4-dicarboxylate transporter DcuB | ||||
| Edwardsiella tarda EIB202 | ETAE_2844 | -271 | 3.4 | TTATTTTTTATTAA |
| Enterobacter sp. 638 | Ent638_2479 | -93 | 3.6 | TTGAATTTATACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1533 | -279 | 3.7 | TTTATTTTCATGAA |
| -243 | 4.5 | TAGATTTAGATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b4123 | -283 | 4 | CCGATAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04367 | -210 | 3.4 | TCTACTCATATCAA |
| Proteus mirabilis HI4320 | PMI0389 | -78 | 3.4 | TTGTTTTTTTGCAA |
| Salmonella typhimurium LT2 | STM4301 | -72 | 3.5 | TTCACAAAAATCAG |
| Serratia proteamaculans 568 | Spro_3863 | -189 | 3.8 | CAGATTAAAATCAA |
| Yersinia pestis KIM | y0901 | -239 | 3.4 | TTAATTTAAAGCAC |
|
Position: -149
Score: 5.3 Sequence: TTGATATATATCAA
Locus tag: ECA1815
|
||||
| ECA1815 | -149 | 5.3 | TTGATATATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -135
Score: 4.8 Sequence: TTGATCAAAAACAA
Locus tag: ECA1875
|
||||
| ECA1875 | -135 | 4.8 | TTGATCAAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03814 | -146 | 4.7 | TTGATTAAAGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1875 | -135 | 4.8 | TTGATCAAAAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b4070 | -141 | 4.7 | TTGATTAAAGACAA |
| Salmonella typhimurium LT2 | STM4277 | -143 | 4.7 | TTGATTAAAGACAA |
|
Position: -110
Score: 3.9 Sequence: TTTATTGATCTCAA
Position: -106
Score: 4.4 Sequence: TTGATCTCAATAAA
Locus tag: ECA1882
|
||||
| ECA1882 | -110 | 3.9 | TTTATTGATCTCAA | |
| -106 | 4.4 | TTGATCTCAATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmA | ||||
| Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00574 | -35 | 3.4 | TTGCCCGACATCAG |
| Edwardsiella tarda EIB202 | ETAE_2461 | -396 | 4.3 | TTGCTATATATCAG |
| 5 | 3.5 | GCGATTAAAATCAG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1882 | -106 | 4.4 | TTGATCTCAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2201 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02081 | -326 | 3.4 | GTGATACAAGTCAC |
| Salmonella typhimurium LT2 | STM2254 | -90 | 3.3 | CTTATTTACAAAAA |
| Salmonella typhimurium LT2 | STM3819 | -110 | 4.7 | TTGATACCAATCAA |
| Yersinia pestis KIM | y1567 | -302 | 4 | TGGATTTTTAACAA |
|
Position: 0
Score: 3.3 Sequence: ATGTTGAAAAAAAA
Position: 3
Score: 3.4 Sequence: TTGAAAAAAAACTA
Locus tag: ECA1884
|
||||
| ECA1884 | 0 | 3.3 | ATGTTGAAAAAAAA | |
| 3 | 3.4 | TTGAAAAAAAACTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmC | ||||
| Ortholog function: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00577 | -136 | 3.6 | TTGACTGGCGACAA |
| Edwardsiella tarda EIB202 | ETAE_2459 | -114 | 3.5 | TTATTGTATATAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1884 | -106 | 4.4 | TTGATCTCAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2199 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02079 | -326 | 3.4 | GTGATACAAGTCAC |
| Salmonella typhimurium LT2 | STM2252 | -90 | 3.3 | CTTATTTACAAAAA |
| Salmonella typhimurium LT2 | STM3817 | -110 | 4.7 | TTGATACCAATCAA |
| Yersinia pestis KIM | y1569 | -302 | 4 | TGGATTTTTAACAA |
|
Position: 9
Score: 3.2 Sequence: CTGACAACCATCAT
Locus tag: ECA1890
|
||||
| ECA1890 | 9 | 3.2 | CTGACAACCATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmH | ||||
| Ortholog function: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00583 | -19 | 3.3 | TTTATAAGGATAAA |
| Edwardsiella tarda EIB202 | ETAE_2454 | -114 | 3.5 | TTATTGTATATAAA |
| Edwardsiella tarda EIB202 | ETAE_2453 | -114 | 3.5 | TTATTGTATATAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1889 | -106 | 4.4 | TTGATCTCAATAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1890 | -106 | 4.4 | TTGATCTCAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2194 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02074 | -326 | 3.4 | GTGATACAAGTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02073 | -326 | 3.4 | GTGATACAAGTCAC |
| Salmonella typhimurium LT2 | STM2247 | -90 | 3.3 | CTTATTTACAAAAA |
| Salmonella typhimurium LT2 | STM3812 | -110 | 4.7 | TTGATACCAATCAA |
| Yersinia pestis KIM | y1575 | 12 | 3.6 | CTGATAGTCATCAT |
| Yersinia pestis KIM | y1574 | -302 | 4 | TGGATTTTTAACAA |
|
Position: 7
Score: 3.6 Sequence: TTGCTATGAAACAG
Locus tag: ECA1892
|
||||
| ECA1892 | 7 | 3.6 | TTGCTATGAAACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napC | ||||
| Ortholog function: Cytochrome c-type protein NapC | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00573 | -35 | 3.4 | TTGCCCGACATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2202 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2255 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: 30
Score: 3.2 Sequence: GTGGTTCACGTCAA
Locus tag: ECA1897
|
||||
| ECA1897 | 30 | 3.2 | GTGGTTCACGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD | ||||
| Ortholog function: Periplasmic nitrate reductase component NapD | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00568 | -35 | 3.4 | TTGCCCGACATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2207 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2260 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: -268
Score: 4.9 Sequence: TTGATGCAAATCAA
Locus tag: ECA2029
|
||||
| ECA2029 | -268 | 4.9 | TTGATGCAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narX | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-) | ||||
| Enterobacter sp. 638 | Ent638_2317 | -251 | 5.5 | TTGATATAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2029 | -268 | 4.9 | TTGATGCAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1222 | -279 | 5.4 | TTGATGTAAATCAA |
| -241 | 4.6 | TTGATATTTATCAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02216 | -251 | 5.5 | TTGATATAAATCAA |
| Proteus mirabilis HI4320 | PMI3569 | -235 | 4.5 | ATGATCTGCATCAA |
| Salmonella typhimurium LT2 | STM1766 | -281 | 5.5 | TTGATATAAATCAA |
| Serratia proteamaculans 568 | Spro_2899 | -301 | 5.4 | TTGATGTAAATCAA |
|
Position: -82
Score: 5 Sequence: TTGATTTGCATCAA
Locus tag: ECA2030
|
||||
| ECA2030 | -82 | 5 | TTGATTTGCATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2030 | -82 | 5 | TTGATTTGCATCAA |
|
Position: -141
Score: 4.7 Sequence: TTGATCGTTATCAA
Locus tag: ECA2031
|
||||
| ECA2031 | -141 | 4.7 | TTGATCGTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narG | ||||
| Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2031 | -141 | 4.7 | TTGATCGTTATCAA |
| Proteus mirabilis HI4320 | PMI3571 | -73 | 4.3 | |
| Serratia proteamaculans 568 | Spro_2883 | -140 | 4.7 | TTGATCGCAATCAA |
|
Position: -134
Score: 4.8 Sequence: TTGTTTTTTATCAA
Locus tag: ECA2189
|
||||
| ECA2189 | -134 | 4.8 | TTGTTTTTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemA | ||||
| Ortholog function: Glutamyl-tRNA reductase (EC 1.2.1.70) | ||||
| Enterobacter sp. 638 | Ent638_2338 | -82 | 4.3 | TTGTCTTAAATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2189 | -134 | 4.8 | |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02235 | -143 | 4.4 | TTGTCTGAAATCAA |
| Salmonella typhimurium LT2 | STM1777 | -131 | 4.3 | TTGTCTTAAATCAT |
|
Position: -34
Score: 4.6 Sequence: TTGACCAATATCAA
Locus tag: ECA2207
|
||||
| ECA2207 | -34 | 4.6 | TTGACCAATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -305
Score: 3.8 Sequence: TTGATCACAAAAAA
Locus tag: ECA2326
|
||||
| ECA2326 | -305 | 3.8 | TTGATCACAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -238 | 4.1 | TTGATCTGGATCAC |
| Enterobacter sp. 638 | Ent638_2304 | -249 | 4.5 | TTGATTCAGATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -311 | 3.6 | TCGATGTTGATCAC |
| -305 | 3.8 | TTGATCACAAAAAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -237 | 4.3 | TTGATTTGGATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -233 | 4.7 | TTGATCTAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -134 | 4.5 | GTGATTAAGATCAA |
| Proteus mirabilis HI4320 | PMI1486 | -242 | 3.8 | GTGATGTAGATCAC |
| Salmonella typhimurium LT2 | STM1749 | -238 | 4.7 | TTGATTTAGATCAC |
| Serratia proteamaculans 568 | Spro_2704 | -274 | 4.4 | ATGATTTAAATCAC |
|
Position: -93
Score: 3.8 Sequence: TTGAGCCAAATAAA
Locus tag: ECA2575
|
||||
| ECA2575 | -93 | 3.8 | TTGAGCCAAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycgM | ||||
| Ortholog function: Fumarylacetoacetate hydrolase family protein | ||||
| Enterobacter sp. 638 | Ent638_3376 | 19 | 4.1 | TTTATAAAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2575 | -93 | 3.8 | TTGAGCCAAATAAA |
|
Position: -75
Score: 4.5 Sequence: ATGATCCACATCAA
Locus tag: ECA2596
|
||||
| ECA2596 | -75 | 4.5 | ATGATCCACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -116 | 4.9 | ATGATCTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2181 | -117 | 4.2 | ATGATCCATGTCAA |
| Enterobacter sp. 638 | Ent638_1424 | -74 | 4.9 | ATGATCTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -228 | 4 | ATGATTTTTATTAA |
| -75 | 4.5 | ATGATCCACATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -74 | 4.9 | ATGATCTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -117 | 4.9 | ATGATCTATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -267 | 4.1 | TTTATTTGCAACAA |
| -159 | 4.7 | TTTATTAAAATCAA | ||
| -84 | 4.9 | ATGATCTATATCAA | ||
| Proteus mirabilis HI4320 | PMI0706 | -159 | 4.1 | TTATTATTAATCAA |
| -85 | 4.5 | ATGATCCATATCAA | ||
| Salmonella typhimurium LT2 | STM0974 | -74 | 4.9 | ATGATCTATATCAA |
| Serratia proteamaculans 568 | Spro_1703 | -143 | 3.9 | ATAATTTAACTCAA |
| -81 | 4.6 | ATGATCCAAATCAA | ||
| Yersinia pestis KIM | y2789 | -80 | 4.5 | ATGATCCATATCAA |
|
Position: -114
Score: 4.4 Sequence: TTGCGCTAAATCAA
Locus tag: ECA2662
|
||||
| ECA2662 | -114 | 4.4 | TTGCGCTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Edwardsiella tarda EIB202 | ETAE_2215 | -113 | 4.4 | TTGCGTTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2662 | -114 | 4.4 | TTGCGCTAAATCAA |
| Proteus mirabilis HI4320 | PMI2112 | -131 | 4.4 | TTGCGTTAGATCAA |
| Serratia proteamaculans 568 | Spro_1666 | -66 | 4.4 | TTGCGCTAAATCAA |
| Yersinia pestis KIM | y2819 | -115 | 4.1 | TTGCGTCAAATCAA |
|
Position: 21
Score: 3.8 Sequence: TTGACCCACATAAA
Locus tag: ECA2815
|
||||
| ECA2815 | 21 | 3.8 | TTGACCCACATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaC | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaC | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02343 | -253 | 4.7 | CTGATGTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2346 | -380 | 3.9 | GTGACATGTATCAA |
| Enterobacter sp. 638 | Ent638_1275 | -236 | 4.4 | ATGACGTATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1220 | -212 | 4.2 | TCGCTATATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2815 | -321 | 3.5 | ATGACCTGAGACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0783 | -263 | 4.9 | ATGATGTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00812 | -257 | 4 | CTGACCGACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1500 | -155 | 3.7 | TCGTTTTACATTAA |
| Salmonella typhimurium LT2 | STM0804 | -264 | 5 | ATGATATATATCAA |
| Serratia proteamaculans 568 | Spro_1322 | -312 | 3.7 | GTGATTCCGGTCAA |
| Yersinia pestis KIM | y3021 | -222 | 3.7 | GTGATGATCAACAA |
|
Position: -321
Score: 3.5 Sequence: ATGACCTGAGACAA
Position: -139
Score: 3.5 Sequence: CCGATGAGAATCAA
Locus tag: ECA2817
|
||||
| ECA2817 | -321 | 3.5 | ATGACCTGAGACAA | |
| -139 | 3.5 | CCGATGAGAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02345 | -253 | 4.7 | CTGATGTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2347 | -380 | 3.9 | GTGACATGTATCAA |
| Enterobacter sp. 638 | Ent638_1273 | -236 | 4.4 | ATGACGTATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1218 | -212 | 4.2 | TCGCTATATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2817 | -321 | 3.5 | ATGACCTGAGACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0781 | -263 | 4.9 | ATGATGTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00810 | -257 | 4 | CTGACCGACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1499 | -155 | 3.7 | TCGTTTTACATTAA |
| Salmonella typhimurium LT2 | STM0802 | -264 | 5 | ATGATATATATCAA |
| Serratia proteamaculans 568 | Spro_1320 | -312 | 3.7 | GTGATTCCGGTCAA |
| Yersinia pestis KIM | y3023 | -310 | 4.3 | GTGATTTTAAACAA |
|
Position: -117
Score: 3.7 Sequence: ATGAGCTTACTCAA
Locus tag: ECA2818
|
||||
| ECA2818 | -117 | 3.7 | ATGAGCTTACTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhK | ||||
| Ortholog function: Predicted transferase, NAD(P)-binding | ||||
| Edwardsiella tarda EIB202 | ETAE_2348 | -92 | 3.9 | TTGATACATGTCAC |
| Enterobacter sp. 638 | Ent638_1272 | -90 | 4.5 | TTGATATACGTCAT |
| Erwinia amylovora ATCC 49946 | EAM_1217 | -88 | 4 | TTGATATATAGCGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2818 | -117 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0780 | -147 | 4.8 | TTGATATACATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00809 | -91 | 4 | TTGATGTCGGTCAG |
| Salmonella typhimurium LT2 | STM0801 | -146 | 4.8 | TTGATATATATCAT |
| Yersinia pestis KIM | y3024 | -190 | 4.2 | TTGTTTAAAATCAC |
|
Position: -24
Score: 3.5 Sequence: TTGATGAAAAACGG
Locus tag: ECA2836
|
||||
| ECA2836 | -24 | 3.5 | TTGATGAAAAACGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moeA | ||||
| Ortholog function: Molybdopterin biosynthesis protein MoeA | ||||
| Edwardsiella tarda EIB202 | ETAE_1153 | -335 | 3.8 | ATGATACAGATCAC |
| Enterobacter sp. 638 | Ent638_1321 | -155 | 3.3 | TCTATAAATATCAT |
| Erwinia amylovora ATCC 49946 | EAM_1284 | -244 | 3.5 | CTGTGATAAATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2836 | -383 | 3.7 | ATGATGTAAAGCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0827 | 18 | 3.7 | TTGATGTCGCTCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1540 | -244 | 3.9 | TTGACAGTGGTCAA |
| Proteus mirabilis HI4320 | PMI0637 | -182 | 3.7 | TTAAAATACAACAA |
| Yersinia pestis KIM | y2673 | -202 | 3.8 | TTGATATATATATA |
|
Position: -91
Score: 4.1 Sequence: ATGATGTTAATCAT
Locus tag: ECA3039
|
||||
| ECA3039 | -91 | 4.1 | ATGATGTTAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: -195
Score: 5.2 Sequence: TTGATTTAAGTCAA
Locus tag: ECA3288
|
||||
| ECA3288 | -195 | 5.2 | TTGATTTAAGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiD | ||||
| Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3288 | -248 | 5.2 | TTGATATAAAACAA |
| -195 | 5.2 | TTGATTTAAGTCAA | ||
| -55 | 3.7 | TTTAACTACGTCAA | ||
|
Position: -228
Score: 5.1 Sequence: TTGACTTAAATCAA
Position: -175
Score: 5.1 Sequence: TTGTTTTATATCAA
Locus tag: ECA3289
|
||||
| ECA3289 | -228 | 5.1 | TTGACTTAAATCAA | |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: -116
Score: 4.2 Sequence: GTGATTTAGCTCAA
Locus tag: ECA3790
|
||||
| ECA3790 | -116 | 4.2 | GTGATTTAGCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -116 | 4.7 | CTGATTTCAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0658 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0659 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -115 | 4.8 | ATGATTTCAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2047 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0151 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4012 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0766 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: -339
Score: 5 Sequence: TTGATATATGTCAA
Locus tag: ECA3893
|
||||
| ECA3893 | -339 | 5 | TTGATATATGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Aerobic respiration control protein arcA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03387 | -291 | 5.1 | TTGATATATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0561 | -300 | 5.1 | TTGATATATGTCAA |
| Enterobacter sp. 638 | Ent638_0562 | -291 | 5.1 | TTGATATATGTCAA |
| Erwinia amylovora ATCC 49946 | EAM_0640 | -399 | 4.5 | TTGATGCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3893 | -339 | 5.1 | TTGATATATGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4401 | -291 | 5.1 | TTGATATATGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04856 | -291 | 5.1 | TTGATATATGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0562 | -282 | 4.9 | TTGATGTACGTCAA |
| Proteus mirabilis HI4320 | PMI3719 | -343 | 4 | ATTACATAAATCAA |
| -282 | 4.6 | TTGATATGTGTCAA | ||
| Salmonella typhimurium LT2 | STM4598 | -291 | 5.1 | TTGATATATGTCAA |
| Serratia proteamaculans 568 | Spro_0681 | -299 | 5.1 | TTGATATATGTCAA |
| Yersinia pestis KIM | y3721 | -298 | 5.1 | TTGATATATGTCAA |
|
Position: -185
Score: 4.8 Sequence: TTTATCTAAATCAA
Locus tag: ECA4121
|
||||
| ECA4121 | -185 | 4.8 | TTTATCTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltA | ||||
| Ortholog function: Citrate synthase (EC 2.3.3.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02439 | -67 | 3.8 | TTGATTTATGTAAC |
| Enterobacter sp. 638 | Ent638_1221 | -147 | 3.6 | TCGCGCTAGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1167 | -171 | 3.7 | ATGATACTCATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4121 | -185 | 4.8 | TTTATCTAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0720 | -173 | 3.6 | TTATTCGTCATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00489 | 28 | 3.6 | TTGCCGGACAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1425 | -110 | 3.6 | TTGATGACAAAGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3138 | -56 | 3.8 | CCTATTTAAATCAA |
| Salmonella typhimurium LT2 | STM0730 | -213 | 3.9 | TCGAAATTAATCAA |
|
Position: -38
Score: 4.2 Sequence: TTTATTTAATTCAA
Locus tag: ECA4151
|
||||
| ECA4151 | -38 | 4.2 | TTTATTTAATTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glgB | ||||
| Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | ||||
| Edwardsiella tarda EIB202 | ETAE_3307 | -153 | 4.8 | TTCATTTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4151 | -38 | 4.2 | TTTATTTAATTCAA |
| Yersinia pestis KIM | y3886 | -25 | 4.2 | ATGCTATTAATCAA |
|
Position: -144
Score: 3.6 Sequence: GTGATGCAAATCAC
Position: -84
Score: 4.5 Sequence: TTGCTCTTTATCAA
Locus tag: ECA4165
|
||||
| ECA4165 | -144 | 3.6 | GTGATGCAAATCAC | |
| -84 | 4.5 | TTGCTCTTTATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -30 | 3.8 | ATGATAAAAAACGA |
| Edwardsiella tarda EIB202 | ETAE_3115 | -78 | 4.1 | TTGCTCCTTATCAA |
| Enterobacter sp. 638 | Ent638_2805 | -69 | 4.3 | ATGTTCGAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -84 | 4.5 | TTGCTCTTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -71 | 3.6 | ATGCGCGAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -71 | 4.1 | ATGCTCGAAATCAA |
| Proteus mirabilis HI4320 | PMI3592 | -107 | 4.2 | TTGCTCATTATCAA |
| Salmonella typhimurium LT2 | STM2284 | -30 | 3.8 | ATGATAAAAAACGA |
| Serratia proteamaculans 568 | Spro_0200 | -74 | 4.3 | TTGTTCCTTATCAA |
| Yersinia pestis KIM | y0404 | -145 | 4.3 | TTGATCACAATCAT |
| -91 | 4.4 | TTGTTTCTTATCAA | ||
|
Position: -249
Score: 4.3 Sequence: TTGATAAAGAGCAA
Position: -189
Score: 3.6 Sequence: GTGATTTGCATCAC
Locus tag: ECA4166
|
||||
| ECA4166 | -249 | 4.3 | TTGATAAAGAGCAA | |
| -189 | 3.6 | GTGATTTGCATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: Glycerol-3-phosphate transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -257 | 3.7 | TCGTTTTTTATCAT |
| Edwardsiella tarda EIB202 | ETAE_3116 | -301 | 3.8 | GTGATCAAAATCAC |
| Enterobacter sp. 638 | Ent638_2804 | -197 | 4.2 | TTGATTTCGAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -249 | 4.3 | TTGATAAAGAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -214 | 3.8 | TTGATTTCGAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -306 | 4.2 | TTGATAAAGAACAG |
| Proteus mirabilis HI4320 | PMI3591 | -287 | 4 | TTGATAATGAGCAA |
| -45 | 4.9 | TTGTTTAATATCAA | ||
| Salmonella typhimurium LT2 | STM2283 | -256 | 3.7 | TCGTTTTTTATCAT |
| Serratia proteamaculans 568 | Spro_0199 | -305 | 4.3 | TTGATAAGGAACAA |
|
Position: -140
Score: 4 Sequence: CTGACCTGAATCAA
Locus tag: ECA4307
|
||||
| ECA4307 | -140 | 4 | CTGACCTGAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |
|
Position: -102
Score: 3.6 Sequence: TTGAGATTTAAAAA
Locus tag: ECA4410
|
||||
| ECA4410 | -102 | 3.6 | TTGAGATTTAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ssuA | ||||
| Ortholog function: Sulfonate ABC transporter, periplasmic sulfonate-binding protein ssuA / Alkanesulfonates-binding protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02125 | -43 | 3.7 | TTAATGAAAATCGA |
| Enterobacter sp. 638 | Ent638_1455 | -181 | 3.5 | TTGACCTGAGGCAA |
| Erwinia amylovora ATCC 49946 | EAM_1364 | 9 | 3.7 | TTGTCTAAAGTCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4410 | -102 | 3.6 | TTGAGATTTAAAAA |
| Escherichia coli str. K-12 substr. MG1655 | b0936 | -278 | 3.6 | GCCATTTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00972 | -182 | 3.8 | TTGACCTGCGACAA |
| Serratia proteamaculans 568 | Spro_1738 | -256 | 4.6 | TTGATTAAAAGCAA |
| Yersinia pestis KIM | y0245 | -252 | 3.7 | GTGATCTGGCTCAA |
|
Position: -64
Score: 3.7 Sequence: CTGATAAACATTAA
Locus tag: ECA4474
|
||||
| ECA4474 | -64 | 3.7 | CTGATAAACATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pstB | ||||
| Ortholog function: Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00062 | -243 | 4.4 | CTGTTTTTAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3541 | -93 | 3.8 | TTTACTGTCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4474 | -52 | 3.6 | CTGATTGATAACGA |
| Escherichia coli str. K-12 substr. MG1655 | b3725 | -138 | 3.8 | CTTATTTAAATCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0217 | -33 | 3.9 | TTGTTGATTCTCAA |
| Proteus mirabilis HI4320 | PMI2896 | -46 | 4 | TTGATAGATGTCGA |
|
Position: -52
Score: 3.6 Sequence: CTGATTGATAACGA
Locus tag: ECA4477
|
||||
| ECA4477 | -52 | 3.6 | CTGATTGATAACGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pstS | ||||
| Ortholog function: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00065 | -243 | 4.4 | CTGTTTTTAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3538 | -93 | 3.8 | TTTACTGTCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4477 | -52 | 3.6 | CTGATTGATAACGA |
| Escherichia coli str. K-12 substr. MG1655 | b3728 | -138 | 3.8 | CTTATTTAAATCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0214 | -33 | 3.9 | TTGTTGATTCTCAA |
| Proteus mirabilis HI4320 | PMI2893 | -46 | 4 | TTGATAGATGTCGA |
|
Position: -191
Score: 3.7 Sequence: ATGATTGTTAGCAA
Locus tag: ECA4519
|
||||
| ECA4519 | -191 | 3.7 | ATGATTGTTAGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase protein I | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4125 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3057 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3872 | -122 | 4.2 | TTGTTTGAAATCAC |