Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of KdgR regulog to Dickeya dadantii 3937

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Dickeya dadantii 3937
Orthologous TF(s) No orthologous TFs found
Regulated genes 21
Built upon 159 sites [see more]
Predicted regulatory interactions in Dickeya dadantii 3937
Locus tag Position Score Sequence
Position: 21
Score: 5.4
Sequence: AATCAAAACATTGTTTCAGTT
Locus tag: null
null 21 5.4 AATCAAAACATTGTTTCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655 b4252 -35 6 AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2 STM4468 -32 5.7 AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895 CKO_03553 -33 6.2 AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04658 -33 5.8 AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638 Ent638_0453 -34 6 AAATGAAACATTGTTTTATAT
Yersinia pestis KIM y0739 -41 5.9 TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0383 -41 5.1 TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202 ETAE_3112 -39 5.6 AAATAAAACGCAGTTTTATAA
Position: -66
Score: 6.1
Sequence: AAATAAAACGGCGTTTCATTA
Locus tag: null
null -66 6.1 AAATAAAACGGCGTTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655 b3090 -64 5.4 ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM y3597 -133 5.2 ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0648 -70 6.2 AAATAAAACGGCGTTTCATTT
Position: -39
Score: 5.8
Sequence: AAATGAAATAATGTTTTAATA
Locus tag: null
null -39 5.8 AAATGAAATAATGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: togT
Ortholog function: Oligogalacturonide transporter
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02398 -46 5.2 TATAAAAACAGTGTTTCAAAA
Yersinia pestis KIM y2961 -47 4.5 AAAGAAAACAGTTATTCATTA
-25 6.1 AAATGAAACATTGTTTTAATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0817 -60 4.5 TAAAGAAATGATAGTTCAATC
-38 5.5 AACTGAAATATTGTTTCATAT
Position: -2
Score: 5.7
Sequence: AAATGAAACGTTGTTTTACTT
Locus tag: null
null -2 5.7 AAATGAAACGTTGTTTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehN
Ortholog function: putative polygalacturonase
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1190 -37 5.7 TATTAAAACGATATTTCATTA
Position: -156
Score: 6.1
Sequence: AAATGAAATAATGTTTTATTT
Locus tag: null
null -156 6.1 AAATGAAATAATGTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgF
Ortholog function: Pectin degradation protein KdgF
Citrobacter koseri ATCC BAA-895 CKO_04218 -38 5.6 AGTTGAAACATTGTTTCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03255 -39 5.8 AAATGAAACAATGTTTCACTT
Enterobacter sp. 638 Ent638_3287 -38 5.5 AATTAAAACAATGTTTCACTA
Yersinia pestis KIM y1888 -155 6 AAATGAAATGATGTTTTATTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2399 -174 6.1 AAATGAAATAATGTTTTATTT
Position: -188
Score: 6.1
Sequence: AAATAAAACATTATTTCATTT
Locus tag: null
null -188 6.1 AAATAAAACATTATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kduI
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Escherichia coli str. K-12 substr. MG1655 b2843 -130 6.3 AAATGAAACATTGTTTTATTT
-63 5.4 AAACGAAACAGTGTTTCACTA
Salmonella typhimurium LT2 STM3018 -123 6.2 AAATGAAACGTTGTTTTATTT
-58 5.3 AATCAAAACAGTGTTTTGATT
Citrobacter koseri ATCC BAA-895 CKO_04220 -119 6.2 AAATGAAACAACGTTTTATTT
-51 4.4 AAACGGAACGGTGTTTCGCCT
Enterobacter sp. 638 Ent638_3296 -127 5.4 AACTGAAACAACGTTTTAAAT
-60 5 AATCGGAACATTGTTTCGTTA
Yersinia pestis KIM y1887 -201 6 TAATAAAACATCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2400 -209 6.1 AAATAAAACATTATTTCATTT
Edwardsiella tarda EIB202 ETAE_1898 -129 5.6 AATCAAAACAGCATTTCATTT
Position: -62
Score: 5.3
Sequence: AATCAAAACAATGTTTCTATT
Locus tag: null
null -62 5.3 AATCAAAACAATGTTTCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelW
Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9)
Yersinia pestis KIM y1885 -152 4.5 AATCAAAACAACGTTCCGACT
-76 5.2 GATTGAAACGATGTTTCTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2402 -139 4.5 AATCAAAACAACGTTCCGACT
-61 5.3 AATCAAAACAGTGTTTCTATT
Position: -155
Score: 5.5
Sequence: AAATGAAAGAATGTTTTATAA
Position: -113
Score: 5.4
Sequence: AAATGAAACGTTGTTTCTACA
Locus tag: null
null -155 5.5 AAATGAAAGAATGTTTTATAA
-113 5.4 AAATGAAACGTTGTTTCTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Enterobacter sp. 638 Ent638_3293 -226 5.1 AATTAAAACGCCGTTTTACAA
Yersinia pestis KIM y1875 -96 5.8 AAATGAAACATTGTTTCTATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2426 -180 5.8 AAATGAAACATTGTTTCTATA
Position: -210
Score: 6
Sequence: AAAAGAAACATTGTTTCATTT
Locus tag: null
null -210 6 AAAAGAAACATTGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgT
Ortholog function: 2-keto-3-deoxygluconate permease
Escherichia coli str. K-12 substr. MG1655 b3909 -140 6 AAATAAAACAGCGTTTCAATT
Citrobacter koseri ATCC BAA-895 CKO_03092 -147 5.6 AAATGAAACATAGTTTTGTTA
Position: -243
Score: 5.7
Sequence: TATTAAAACACTATTTCATTA
Locus tag: null
null -243 5.7 TATTAAAACACTATTTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Escherichia coli str. K-12 substr. MG1655 b1702 -222 5.3 TATGAAAACAGCATTTCATTT
Salmonella typhimurium LT2 STM1349 -226 4.9 AATGAAAAGTGTGTTTCATTT
Citrobacter koseri ATCC BAA-895 CKO_01725 -249 5.5 AAATGAAACGCTATTTTTATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02160 -254 5.1 AATTGAAACGCTATTTTTGTT
Enterobacter sp. 638 Ent638_1745 -249 5.3 AAATGAAATGGTGTTTTTAAT
Serratia proteamaculans 568 Spro_2174 -364 5.2 AAgTaAAACAcTaTTTCAaaT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1853 -227 5.6 TATTAAAACGCCATTTCATTA
Position: -61
Score: 5.7
Sequence: TAATGAAATAGTGTTTTAATA
Locus tag: null
null -61 5.7 TAATGAAATAGTGTTTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsR
Ortholog function: PEP synthetase regulatory protein
Escherichia coli str. K-12 substr. MG1655 b1703 -131 5.3 AAATGAAATGCTGTTTTCATA
Salmonella typhimurium LT2 STM1348 -131 4.9 AAATGAAACACACTTTTCATT
Citrobacter koseri ATCC BAA-895 CKO_01727 -107 5.5 TATAAAAATAGCGTTTCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02161 -97 5.1 AACAAAAATAGCGTTTCAATT
Enterobacter sp. 638 Ent638_1744 -107 5.3 ATTAAAAACACCATTTCATTT
Serratia proteamaculans 568 Spro_2173 -134 5.2 ATTTGAAATAGTGTTTTACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1852 -94 5.6 TAATGAAATGGCGTTTTAATA
Position: -54
Score: 5.6
Sequence: AAATGAAATAGTGTTTTAAAA
Locus tag: null
null -54 5.6 AAATGAAATAGTGTTTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spiX
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1742 -54 5.1 AATTGAAATACAGTTTTAAAA
Position: -212
Score: 5.4
Sequence: TTTTAAAACATCGTTTCATCT
Locus tag: null
null -212 5.4 TTTTAAAACATCGTTTCATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeeO
Ortholog function: predicted multidrug efflux system, MATE family
Escherichia coli str. K-12 substr. MG1655 b1985 -7 4.9 ATTTGAAATGTGGTTTCACTT
Salmonella typhimurium LT2 STM2013 -7 5 TATTGAAATGTGGTTTCAACT
Citrobacter koseri ATCC BAA-895 CKO_00837 -7 4.9 ATTTGAAATGAGGTTTCAACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02447 -40 5.1 ATTTGAAATGTTGTTTCAACA
Enterobacter sp. 638 Ent638_2574 -74 5 ATTTGAAATGTAGTTTCAACT
Yersinia pestis KIM y2593 -158 4.8 TCATGAAACTATGTTCCATTT
Serratia proteamaculans 568 Spro_3106 -39 5.2 ATTTGAAATGTTGTTTCACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2762 -140 5.1 AATAGAAACGTCATTTTAAAA
Position: -228
Score: 4.5
Sequence: AATTAAAATAAAATGTTGTTT
Position: -223
Score: 5.7
Sequence: AAATAAAATGTTGTTTTGTTT
Locus tag: null
null -228 4.5 AATTAAAATAAAATGTTGTTT
-223 5.7 AAATAAAATGTTGTTTTGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chmX
Ortholog function: methyl-accepting chemotaxis protein
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3902 -172 4.5 TATTGAAACGTGATTTCTATC
Position: -86
Score: 5.1
Sequence: TTATAAAACATAGTTTCTTAA
Locus tag: null
null -86 5.1 TTATAAAACATAGTTTCTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehX
Ortholog function: Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3111 -291 4.9 TAATGAAACCATGTTTTACCA
Position: -78
Score: 5.1
Sequence: TTATAAAACGTCGTTTCGAAA
Locus tag: null
null -78 5.1 TTATAAAACGTCGTTTCGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehX
Ortholog function: Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3111 -291 4.9 TAATGAAACCATGTTTTACCA
Position: -34
Score: 5.8
Sequence: TATTGAAACGATATTTCATTT
Locus tag: null
null -34 5.8 TATTGAAACGATATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tpfX
Ortholog function: ThiJ/PfpI-family hypothetical protein
Salmonella typhimurium LT2 STM1931 -231 5.4 TTATGAAACATTGTTTCAGAT
Citrobacter koseri ATCC BAA-895 CKO_01049 -199 5.4 TTTTGAAATGATGTTTCATAT
Enterobacter sp. 638 Ent638_2477 -42 5 GGATGAAACGCTGTTTTAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0102 -85 6.1 TAATAAAACATCGTTTCATTT
Position: -114
Score: 6
Sequence: AAAAGAAACAGTGTTTCATTT
Locus tag: null
null -114 6 AAAAGAAACAGTGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelX
Ortholog function: Pectate disaccharide-lyase
Enterobacter sp. 638 Ent638_4134 -102 5.2 AAGCAAAACAACGTTTTAATT
-60 5.7 AAAAGAAACGACGTTTCATCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4510 -130 5.3 AAATGACACGGTGTTTCATAA
-113 4.2 ATAAAAAACAGACTTTATTTT
-66 6 AAAAGAAACAGCGTTTCATTT
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