Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Dickeya dadantii 3937

Type Regulator Effector Pathway Genes Sites
TF AbgR p-aminobenzoyl-glutamate p-aminobenzoyl-glutamate utilization 2 2
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AraC Arabinose Arabinose utilization 4 8
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 9 24
TF BetI Choline Glycine betaine synthesis 1 1
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 146 322
TF CueR Copper ion, (Cu+) Copper resistance 3 3
TF DeoR Deoxyribonucleoside utilization 1 2
TF ExuR Galacturonate Galacturonate utilization 3 6
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 6 9
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 56 100
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 11 12
TF Fur Iron ion, (Fe2+) Iron homeostasis 23 72
TF GalR/GalS Galactose Galactose utilization 2 3
TF GcvA Glycine Glycine metabolism 2 2
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 12
TF GntR Gluconate Gluconate utilization 1 2
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 3 4
TF HutC cis-Urocanic acid Histidine utilization 2 3
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 21 27
TF LacI Allolactose Lactose utilization 1 1
TF LeuO Guanosine 3',5'-bis(diphosphate) 1 2
TF LexA DNA damage SOS response 16 19
TF LfaR Sugar utilization 2 2
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetR Homocysteine Methionine biosynthesis 5 8
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 3 3
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NadR NAD NAD biosynthesis 1 2
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 2 4
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 8 14
TF NhaR Potassium ion Osmotic stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 2 2
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 2 6
TF NsrR Nitric oxide Nitrosative stress response 5 10
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 7 19
TF PdhR Pyruvate Pyruvate metabolism 2 3
TF PurR Hypoxanthine; Guanine Purine metabolism 18 20
TF QorR Energy metabolism 1 1
TF RbsR Ribose Ribose utilization 1 1
TF RhaR Rhamnose Rhamnose utilization 2 2
TF RhaS Rhamnose Rhamnose utilization 4 4
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 2 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 4 6
TF UxuR Glucuronate Glucuronate utilization 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 5 7
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