Propagation of CcmR regulog to Anabaena variabilis ATCC 29413

Reference regulog properties
Source regulog:	CcmR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Anabaena variabilis ATCC 29413
Orthologous TF(s)	Ava_4466, Ava_2282
Regulated genes	10

Built upon 72 sites [see more]

Predicted regulatory interactions in *Anabaena variabilis ATCC 29413*
	Locus tag	Position	Score	Sequence
Position: -234 Score: 5.8 Sequence: ATAGATTTTTATCTAT Locus tag: Ava_0749
	Ava_0749	-234	5.8	ATAGATTTTTATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142	cce_0603	-74	5.5	ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801	PCC8801_4247	-71	5.6	ATAGACTAAAGTCTAT
		-8	5	ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421	gvip132	-139	5	ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843	MAE_15120	-71	4.9	ATTGACTAGAATCTAT
Nostoc sp. PCC 7120	alr4156	-245	5.9	ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0640	-107	5	CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0172	-63	5	ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803	sll1732	-204	3.9	ATTGTCGCTTGACTAT

Position: -71 Score: 4.7 Sequence: ATAGTCATTAGTCAAT Position: -57 Score: 4.1 Sequence: ATAGTCATTAGTTAAT Position: -51 Score: 4 Sequence: ATTAGTTAATGGCTAT Locus tag: Ava_1025
	Ava_1025	-71	4.7	ATAGTCATTAGTCAAT
		-57	4.1	ATAGTCATTAGTTAAT
		-51	4	ATTAGTTAATGGCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpC
Ortholog function: Bicarbontate ABC transporter, ATP-binding protein 1
Cyanothece sp. ATCC 51142	cce_0303	-299	4.9	ATAGATAAATACCTAT
Cyanothece sp. PCC 7425	Cyan7425_4923	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_3519	-268	4.5	ATACATATTAAGCTAT
Gloeobacter violaceus PCC 7421	gvip282	-168	5.6	ATAGATTAATATCTAT
		-136	5	ATCGACTTTTCTCTAT
Microcystis aeruginosa NIES-843	MAE_20010	-104	4.6	ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1490	-186	4.9	ATTGACTTAGCTCTAT
Synechocystis sp. PCC 6803	slr0043	-208	4.5	TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1	null	-124	4.1	ATAGATTGTTTGCAAT

Position: -313 Score: 4.2 Sequence: ATAAATTTTTACTTAT Locus tag: Ava_1027
	Ava_1027	-313	4.2	ATAAATTTTTACTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142	cce_0305	-299	4.9	ATAGATAAATACCTAT
Cyanothece sp. PCC 7425	Cyan7425_4925	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_3521	-268	4.5	ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843	MAE_19990	-104	4.6	ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1488	-186	4.9	ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0894	-185	4.2	ATAAACGGAAGTCTAT
		-153	4.4	ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803	slr0040	-208	4.5	TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1	null	-124	4.1	ATAGATTGTTTGCAAT

Position: 34 Score: 4.4 Sequence: ATAGTTTTAAAACTCT Locus tag: Ava_2980
	Ava_2980	34	4.4	ATAGTTTTAAAACTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cupS
Ortholog function: CO2 uptake transporter, small subunit
Gloeobacter violaceus PCC 7421	glr1006	-139	5	ATCTACTTTTATCTAT
Nostoc sp. PCC 7120	alr1320	34	4.4	ATAGTTTTAAAACTCT
Synechococcus sp. JA-3-3Ab	CYA_0636	-107	5	CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0175	-63	5	ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803	sll1735	-204	3.9	ATTGTCGCTTGACTAT

Position: -256 Score: 5.8 Sequence: ATAGATTTTTATCTAT Position: -117 Score: 5.8 Sequence: ATAGATTTTTATCTAT Position: -43 Score: 4.9 Sequence: CTAGTCTTATATCTAT Locus tag: Ava_4466
	Ava_4466	-256	5.8	ATAGATTTTTATCTAT
		-117	5.8	ATAGATTTTTATCTAT
		-43	4.9	CTAGTCTTATATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. PCC 7425	Cyan7425_3855	-93	5.9	ATAGATTTTTGTCTAT
Gloeobacter violaceus PCC 7421	gll1001	-34	5.2	ATAGAACTATGTCTAT
Nostoc sp. PCC 7120	all0862	-285	5.8	ATAGATTTTTATCTAT
		-146	5.8	ATAGATTTTTATCTAT
		-72	4.9	CTAGTCTTATATCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1310	-34	5.7	ATAGACTTAAATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0171	-63	5	ATTGACTCTAGTCTAT
Thermosynechococcus elongatus BP-1	tlr2037	-42	5.1	ATAGAATTTCGTCTAT

Position: -320 Score: 3.7 Sequence: ATTAATATTGATGTAT Locus tag: Ava_4786
	Ava_4786	-320	3.7	ATTAATATTGATGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhC
Ortholog function: Na/H antiporter, subunit C
Cyanothece sp. ATCC 51142	cce_1686	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425	Cyan7425_3542	-121	4.7	ATTTATAAATATCTAT
Cyanothece sp. PCC 8801	PCC8801_2762	-56	4.8	ATAGGCTTTAAGCTAT
		-24	4.7	ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2373	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	slr2006	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2008	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2008	-107	4.3	ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1	tll1818	-219	5	ATTGATAAAAATCTAT
		-193	4.4	ATTGACATTGATCTAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CcmR regulog to Anabaena variabilis ATCC 29413

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --