Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ccmR gene

Properties
Regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Built upon 72 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Cyanothece sp. ATCC 51142
Position: -133
Score: 4.26511
Sequence: ATAGATTTATTTCAAC
Position: -101
Score: 4.83893
Sequence: ATGGAAATAAGTCTAT
Locus tag: cce_3731
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR -133 4.3 ATAGATTTATTTCAAC cce_3731
-101 4.8 ATGGAAATAAGTCTAT
Cyanothece sp. PCC 7425
Position: -93
Score: 5.85786
Sequence: ATAGATTTTTGTCTAT
Locus tag: Cyan7425_3855
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR -93 5.9 ATAGATTTTTGTCTAT Cyan7425_3855
Cyanothece sp. PCC 8801
Position: -144
Score: 4.36968
Sequence: ATAGAATTTAATCAAA
Position: -112
Score: 4.84814
Sequence: ATTGTATTTAATCTAT
Locus tag: PCC8801_3406
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR -144 4.4 ATAGAATTTAATCAAA PCC8801_3406
-112 4.8 ATTGTATTTAATCTAT
Gloeobacter violaceus PCC 7421
Position: -34
Score: 5.19751
Sequence: ATAGAACTATGTCTAT
Locus tag: gll1001
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR -34 5.2 ATAGAACTATGTCTAT gll1001
Microcystis aeruginosa NIES-843
Position: -71
Score: 4.89685
Sequence: ATTGACTAGAATCTAT
Locus tag: MAE_15110
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
Locus tag: MAE_15120
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: MAE_15130
Name: ecaB2
Funciton: Periplasmic carbonic anhydrase
Locus tag: MAE_15140
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
ccmR-ndhF3-ecaB2-ndhD3 -71 4.9 ATTGACTAGAATCTAT MAE_15110
Nostoc sp. PCC 7120
Position: -285
Score: 5.79201
Sequence: ATAGATTTTTATCTAT
Position: -146
Score: 5.79201
Sequence: ATAGATTTTTATCTAT
Position: -72
Score: 4.94318
Sequence: CTAGTCTTATATCTAT
Locus tag: all0862
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR -285 5.8 ATAGATTTTTATCTAT all0862
-146 5.8 ATAGATTTTTATCTAT
-72 4.9 CTAGTCTTATATCTAT
Synechococcus elongatus PCC 7942
Position: -34
Score: 5.74728
Sequence: ATAGACTTAAATCTAT
Locus tag: Synpcc7942_1310
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR -34 5.7 ATAGACTTAAATCTAT Synpcc7942_1310
Synechococcus sp. PCC 7002
Position: -63
Score: 5.03591
Sequence: ATTGACTCTAGTCTAT
Locus tag: SYNPCC7002_A0171
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
Locus tag: SYNPCC7002_A0172
Name: ndhF3
Funciton: NADH dehydrogenase subunit F
Locus tag: SYNPCC7002_A0173
Name: ndhD3
Funciton: NADH dehydrogenase subunit D
Locus tag: SYNPCC7002_A0174
Name: cupA
Funciton: CO2 uptake protein
Locus tag: SYNPCC7002_A0175
Name: cupS
Funciton: CO2 uptake transporter, small subunit
ccmR-ndhF3-ndhD3-cupA-cupS -63 5 ATTGACTCTAGTCTAT SYNPCC7002_A0171
Synechocystis sp. PCC 6803
Position: -240
Score: 4.72861
Sequence: ATTGGCTTTATTCTAT
Position: -179
Score: 4.83565
Sequence: ATAGCCATAGGTCTAT
Locus tag: sll1594
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR -240 4.7 ATTGGCTTTATTCTAT sll1594
-179 4.8 ATAGCCATAGGTCTAT
Thermosynechococcus elongatus BP-1
Position: -42
Score: 5.09796
Sequence: ATAGAATTTCGTCTAT
Locus tag: tlr2037
Name: ccmR
Funciton: Carbon assimilation transcriptional regulator, LysR family
ccmR -42 5.1 ATAGAATTTCGTCTAT tlr2037
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