Profile of regulator CcmR in Cyanobacteria
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Carbon dioxide fixation |
| Effector: | |
| Regulog: | CcmR - Cyanobacteria |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - LysR
- By pathway - Carbon dioxide fixation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Cyanothece sp. ATCC 51142 | |||||
| cce_1689 | bicA | -200 | 5 | ATAGAATCTAGTCTAT | |
| cce_0305 | cmpA | -299 | 4.9 | ATAGATAAATACCTAT | |
| cce_1689 | bicA | -232 | 4.5 | ATAGTAATTAGCCTAT | |
| cce_3974 | glpX | -74 | 5 | ATAGACTTTTGACTAA | |
| cce_0603 | ndhF3 | -74 | 5.5 | ATAGACTTAATTCTAT | |
| cce_3731 | ccmR | -101 | 4.8 | ATGGAAATAAGTCTAT | |
| cce_3731 | ccmR | -133 | 4.3 | ATAGATTTATTTCAAC | |
| cce_2939 | sbtA | -181 | 4 | ATAGATCGATATATAT | |
| cce_2937 | sbtB | -52 | 4.5 | ATAGATTTTTGTCTTA | |
| cce_2494 | mnhD | -180 | 5.1 | ATTGATTTTAGGCTAT | |
| Cyanothece sp. PCC 7425 | |||||
| Cyan7425_3855 | ccmR | -93 | 5.9 | ATAGATTTTTGTCTAT | |
| Cyan7425_3542 | mnhC | -121 | 4.7 | ATTTATAAATATCTAT | |
| Cyan7425_4925 | cmpA | -286 | 5.2 | ATAGACTTAGGGCTAT | |
| Cyan7425_5063 | sbtA | -94 | 4.2 | TTTTACCTATGTCTAT | |
| Cyanothece sp. PCC 8801 | |||||
| PCC8801_2762 | mnhC | -24 | 4.7 | ATAGTTTTTTGTATAT | |
| PCC8801_3521 | cmpA | -268 | 4.5 | ATACATATTAAGCTAT | |
| PCC8801_3646 | glpX | -74 | 5 | ATAGACTTTTGACTAA | |
| PCC8801_2762 | mnhC | -56 | 4.8 | ATAGGCTTTAAGCTAT | |
| PCC8801_1249 | sbtA | -174 | 5.4 | ATAGATAAATGTCTAT | |
| PCC8801_4247 | ndhF3 | -71 | 5.6 | ATAGACTAAAGTCTAT | |
| PCC8801_4247 | ndhF3 | -8 | 5 | ATTGTTATATGTCTAT | |
| PCC8801_3406 | ccmR | -144 | 4.4 | ATAGAATTTAATCAAA | |
| PCC8801_3406 | ccmR | -112 | 4.8 | ATTGTATTTAATCTAT | |
| PCC8801_1398 | cce_1687 | -46 | 5.2 | ATAGCTTTTAATCTAT | |
| PCC8801_1398 | cce_1687 | -14 | 4.2 | ATAGAATAAATACAAT | |
| Gloeobacter violaceus PCC 7421 | |||||
| gvip279 | cmpA | -136 | 5 | ATCGACTTTTCTCTAT | |
| gvip279 | cmpA | -168 | 5.6 | ATAGATTAATATCTAT | |
| gll1001 | ccmR | -34 | 5.2 | ATAGAACTATGTCTAT | |
| gvip132 | ndhF3 | -139 | 5 | ATCTACTTTTATCTAT | |
| Microcystis aeruginosa NIES-843 | |||||
| MAE_30020 | glpX | -71 | 4.9 | ATAGACTTTTGACTGT | |
| MAE_62070 | ccmR | -207 | 4.9 | ATTGTTATAAATCTAT | |
| MAE_62070 | ccmR | -122 | 4.9 | ATTGATTTAAACCTAT | |
| MAE_62070 | ccmR | -238 | 4.3 | ATAGACAAAACTTTAT | |
| MAE_15110 | ccmR | -71 | 4.9 | ATTGACTAGAATCTAT | |
| MAE_19990 | cmpA | -104 | 4.6 | ATAGCTAAATTTCTAT | |
| MAE_62080 | Synpcc7942_2328 | -80 | 5 | ATAAAGTTTTGTCTAT | |
| MAE_62080 | Synpcc7942_2328 | -111 | 4.9 | ATAGATTTATAACAAT | |
| MAE_62080 | Synpcc7942_2328 | -196 | 4.7 | ATAGGTTTAAATCAAT | |
| Nostoc sp. PCC 7120 | |||||
| alr4156 | ndhF3 | -245 | 5.9 | ATAGATTTTTGTCTAT | |
| alr1320 | cupS | 34 | 4.4 | ATAGTTTTAAAACTCT | |
| all0862 | ccmR | -146 | 5.8 | ATAGATTTTTATCTAT | |
| all0862 | ccmR | -72 | 4.9 | CTAGTCTTATATCTAT | |
| all0862 | ccmR | -285 | 5.8 | ATAGATTTTTATCTAT | |
| all2134 | sbtA | -191 | 4.6 | ATAGAATTTTGGCTCT | |
| all2134 | sbtA | -173 | 4.8 | ATAAATATTGATCTAT | |
| Synechococcus elongatus PCC 7942 | |||||
| Synpcc7942_1488 | cmpA | -186 | 4.9 | ATTGACTTAGCTCTAT | |
| Synpcc7942_1475 | sbtA | -207 | 4.6 | ATAGACAGGAATCTAT | |
| Synpcc7942_1310 | ccmR | -34 | 5.7 | ATAGACTTAAATCTAT | |
| Synechococcus sp. JA-3-3Ab | |||||
| CYA_0894 | cmpA | -185 | 4.2 | ATAAACGGAAGTCTAT | |
| CYA_0640 | ndhF3 | -107 | 5 | CTTGATTTTTGTCTAT | |
| CYA_0894 | cmpA | -153 | 4.4 | ATTGTATTGTTTCTAT | |
| Synechococcus sp. PCC 7002 | |||||
| SYNPCC7002_A2371 | bicA | -123 | 5.2 | ATAGATATTAAACTAT | |
| SYNPCC7002_A0472 | sbtB | -131 | 4.6 | ATAGACTTAAAGATAT | |
| SYNPCC7002_A0472 | sbtB | -99 | 4.2 | ATAGAGTCTTGTCTTT | |
| SYNPCC7002_G0011 | porB | -294 | 4.4 | ATAGTCGAAAGACTAT | |
| SYNPCC7002_A0470 | sbtA | -134 | 4.9 | ATAGAGCTAAATCTAT | |
| SYNPCC7002_A0171 | ccmR | -63 | 5 | ATTGACTCTAGTCTAT | |
| Synechocystis sp. PCC 6803 | |||||
| slr2006 | mnhC | -125 | 3.8 | ATAGAATCTATGCAAT | |
| slr2007 | mnhD | -107 | 4.3 | ATTGTGATTGGTCTAT | |
| slr0040 | cmpA | -208 | 4.5 | TTGGATATTTATCTAT | |
| sll0834 | bicA | -45 | 5.3 | ATAGACTAAAGACTAT | |
| sll0834 | bicA | -76 | 4.4 | CTAGAATATTCTCTAT | |
| slr1512 | sbtA | -182 | 4.7 | ATAGACTTTAGCTTAT | |
| slr2094 | glpX | -71 | 5.6 | ATAGACTTTTGACTAT | |
| sll1732 | ndhF3 | -204 | 3.9 | ATTGTCGCTTGACTAT | |
| sll1594 | ccmR | -179 | 4.8 | ATAGCCATAGGTCTAT | |
| sll1594 | ccmR | -240 | 4.7 | ATTGGCTTTATTCTAT | |
| slr1512 | sbtA | -136 | 5 | ATAGACAAGAGTCTAT | |
| Thermosynechococcus elongatus BP-1 | |||||
| null | cmpA | -124 | 4.1 | ATAGATTGTTTGCAAT | |
| tll1818 | mnhC | -193 | 4.4 | ATTGACATTGATCTAA | |
| tll1818 | mnhC | -219 | 5 | ATTGATAAAAATCTAT | |
| tlr2037 | ccmR | -42 | 5.1 | ATAGAATTTCGTCTAT | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |