Propagation of CcmR regulog to Cyanothece sp. ATCC 51142

Reference regulog properties
Source regulog:	CcmR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Cyanothece sp. ATCC 51142
Orthologous TF(s)	cce_3731
Regulated genes	12

Built upon 72 sites [see more]

Predicted regulatory interactions in *Cyanothece sp. ATCC 51142*
	Locus tag	Position	Score	Sequence
Position: -299 Score: 4.9 Sequence: ATAGATAAATACCTAT Position: -267 Score: 4 Sequence: ATTATAAATAATCTAT Locus tag: cce_0305
	cce_0305	-299	4.9	ATAGATAAATACCTAT
		-267	4	ATTATAAATAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142	cce_0305	-299	4.9	ATAGATAAATACCTAT
Cyanothece sp. PCC 7425	Cyan7425_4925	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_3521	-268	4.5	ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843	MAE_19990	-104	4.6	ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1488	-186	4.9	ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0894	-185	4.2	ATAAACGGAAGTCTAT
		-153	4.4	ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803	slr0040	-208	4.5	TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1	null	-124	4.1	ATAGATTGTTTGCAAT

Position: -74 Score: 5.5 Sequence: ATAGACTTAATTCTAT Locus tag: cce_0603
	cce_0603	-74	5.5	ATAGACTTAATTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142	cce_0603	-74	5.5	ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801	PCC8801_4247	-71	5.6	ATAGACTAAAGTCTAT
		-8	5	ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421	gvip132	-139	5	ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843	MAE_15120	-71	4.9	ATTGACTAGAATCTAT
Nostoc sp. PCC 7120	alr4156	-245	5.9	ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0640	-107	5	CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0172	-63	5	ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803	sll1732	-204	3.9	ATTGTCGCTTGACTAT

Position: -46 Score: 3.8 Sequence: GTAGTTTATAATCAAT Locus tag: cce_1049
	cce_1049	-46	3.8	GTAGTTTATAATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cupS
Ortholog function: CO2 uptake transporter, small subunit
Gloeobacter violaceus PCC 7421	glr1006	-139	5	ATCTACTTTTATCTAT
Nostoc sp. PCC 7120	alr1320	34	4.4	ATAGTTTTAAAACTCT
Synechococcus sp. JA-3-3Ab	CYA_0636	-107	5	CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0175	-63	5	ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803	sll1735	-204	3.9	ATTGTCGCTTGACTAT

Position: 3 Score: 3.9 Sequence: AATGACATTTATCTCT Locus tag: cce_1681
	cce_1681	3	3.9	AATGACATTTATCTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: slr2011
Ortholog function: Predicted subunit of the Na/H antiporter
Cyanothece sp. ATCC 51142	cce_1681	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425	Cyan7425_3547	-121	4.7	ATTTATAAATATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2379	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	slr2011	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2011	-107	4.3	ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1	tll1813	-219	5	ATTGATAAAAATCTAT
		-193	4.4	ATTGACATTGATCTAA

Position: -4 Score: 3.8 Sequence: ATCTATGATTAGCTAT Position: 11 Score: 3.8 Sequence: TTTGAGTTATTTCTGT Locus tag: cce_1682
	cce_1682	-4	3.8	ATCTATGATTAGCTAT
		11	3.8	TTTGAGTTATTTCTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhG
Ortholog function: Na/H antiporter, subunit G
Cyanothece sp. ATCC 51142	cce_1682	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425	Cyan7425_3546	-121	4.7	ATTTATAAATATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2378	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	ssr3410	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	ssr3410	-107	4.3	ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1	tsl1814	-219	5	ATTGATAAAAATCTAT
		-193	4.4	ATTGACATTGATCTAA

Position: -200 Score: 5 Sequence: ATAGAATCTAGTCTAT Locus tag: cce_1689
	cce_1689	-200	5	ATAGAATCTAGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bicA
Ortholog function: Bicarbonate transporter
Cyanothece sp. ATCC 51142	cce_1689	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT

Position: -211 Score: 3.9 Sequence: ATATATATATATAAAT Position: -180 Score: 5.1 Sequence: ATTGATTTTAGGCTAT Locus tag: cce_2494
	cce_2494	-211	3.9	ATATATATATATAAAT
		-180	5.1	ATTGATTTTAGGCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhD
Ortholog function: Na/H antiporter, subunit D
Cyanothece sp. ATCC 51142	cce_1685	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. ATCC 51142	cce_2494	-180	5.1	ATTGATTTTAGGCTAT
Cyanothece sp. PCC 7425	Cyan7425_3543	-121	4.7	ATTTATAAATATCTAT
Cyanothece sp. PCC 8801	PCC8801_2761	-56	4.8	ATAGGCTTTAAGCTAT
		-24	4.7	ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2374	-123	5.2	ATAGATATTAAACTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2375	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	slr2007	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2009	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2007	-107	4.3	ATTGTGATTGGTCTAT
Synechocystis sp. PCC 6803	slr2009	-107	4.3	ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1	tll1817	-219	5	ATTGATAAAAATCTAT
		-193	4.4	ATTGACATTGATCTAA

Position: -84 Score: 4.2 Sequence: ATATACTTAAAGGTAT Position: -52 Score: 4.5 Sequence: ATAGATTTTTGTCTTA Locus tag: cce_2937
	cce_2937	-84	4.2	ATATACTTAAAGGTAT
		-52	4.5	ATAGATTTTTGTCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtB
Ortholog function: Predicted membrane protein
Cyanothece sp. ATCC 51142	cce_2937	-52	4.5	ATAGATTTTTGTCTTA
Cyanothece sp. PCC 7425	Cyan7425_5062	-94	4.2	TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801	PCC8801_1248	-174	5.4	ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843	MAE_62100	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120	all2133	-191	4.6	ATAGAATTTTGGCTCT
		-173	4.8	ATAAATATTGATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0472	-131	4.6	ATAGACTTAAAGATAT
		-99	4.2	ATAGAGTCTTGTCTTT
Synechocystis sp. PCC 6803	slr1513	-182	4.7	ATAGACTTTAGCTTAT
		-136	5	ATAGACAAGAGTCTAT

Position: -181 Score: 4 Sequence: ATAGATCGATATATAT Locus tag: cce_2939
	cce_2939	-181	4	ATAGATCGATATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142	cce_2939	-181	4	ATAGATCGATATATAT
Cyanothece sp. PCC 7425	Cyan7425_5063	-94	4.2	TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801	PCC8801_1249	-174	5.4	ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843	MAE_62090	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120	all2134	-191	4.6	ATAGAATTTTGGCTCT
		-173	4.8	ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1475	-207	4.6	ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0470	-134	4.9	ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803	slr1512	-182	4.7	ATAGACTTTAGCTTAT
		-136	5	ATAGACAAGAGTCTAT

Position: -101 Score: 4.8 Sequence: ATGGAAATAAGTCTAT Locus tag: cce_3731
	cce_3731	-101	4.8	ATGGAAATAAGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. ATCC 51142	cce_3731	-133	4.3	ATAGATTTATTTCAAC
		-101	4.8	ATGGAAATAAGTCTAT
Cyanothece sp. PCC 8801	PCC8801_3406	-144	4.4	ATAGAATTTAATCAAA
		-112	4.8	ATTGTATTTAATCTAT
Microcystis aeruginosa NIES-843	MAE_62070	-238	4.3	ATAGACAAAACTTTAT
		-207	4.9	ATTGTTATAAATCTAT
		-122	4.9	ATTGATTTAAACCTAT
Microcystis aeruginosa NIES-843	MAE_15110	-71	4.9	ATTGACTAGAATCTAT
Synechocystis sp. PCC 6803	sll1594	-240	4.7	ATTGGCTTTATTCTAT
		-179	4.8	ATAGCCATAGGTCTAT

Position: -74 Score: 5 Sequence: ATAGACTTTTGACTAA Locus tag: cce_3974
	cce_3974	-74	5	ATAGACTTTTGACTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpX
Ortholog function: Fructose-1,6-bisphosphatase II
Cyanothece sp. ATCC 51142	cce_3974	-74	5	ATAGACTTTTGACTAA
Cyanothece sp. PCC 8801	PCC8801_3646	-74	5	ATAGACTTTTGACTAA
Microcystis aeruginosa NIES-843	MAE_30020	-71	4.9	ATAGACTTTTGACTGT
Synechocystis sp. PCC 6803	slr2094	-71	5.6	ATAGACTTTTGACTAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CcmR regulog to Cyanothece sp. ATCC 51142

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --