Propagation of CcmR regulog to Microcystis aeruginosa NIES-843
| Source regulog: | CcmR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Carbon dioxide fixation |
| Effector: | |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Microcystis aeruginosa NIES-843 |
| Orthologous TF(s) | MAE_62070, MAE_15110 |
| Regulated genes | 11 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -71
Score: 4.9 Sequence: ATTGACTAGAATCTAT
Locus tag: MAE_15110
|
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| MAE_15110 | -71 | 4.9 | ATTGACTAGAATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmR | ||||
| Ortholog function: Carbon assimilation transcriptional regulator, LysR family | ||||
| Cyanothece sp. ATCC 51142 | cce_3731 | -133 | 4.3 | ATAGATTTATTTCAAC |
| -101 | 4.8 | ATGGAAATAAGTCTAT | ||
| Cyanothece sp. PCC 8801 | PCC8801_3406 | -144 | 4.4 | ATAGAATTTAATCAAA |
| -112 | 4.8 | ATTGTATTTAATCTAT | ||
| Microcystis aeruginosa NIES-843 | MAE_62070 | -238 | 4.3 | ATAGACAAAACTTTAT |
| -207 | 4.9 | ATTGTTATAAATCTAT | ||
| -122 | 4.9 | ATTGATTTAAACCTAT | ||
| Microcystis aeruginosa NIES-843 | MAE_15110 | -71 | 4.9 | ATTGACTAGAATCTAT |
| Synechocystis sp. PCC 6803 | sll1594 | -240 | 4.7 | ATTGGCTTTATTCTAT |
| -179 | 4.8 | ATAGCCATAGGTCTAT | ||
|
Position: -219
Score: 4 Sequence: ATTAATTCTTATCAAT
Position: -104
Score: 4.6 Sequence: ATAGCTAAATTTCTAT
Locus tag: MAE_19990
|
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| MAE_19990 | -219 | 4 | ATTAATTCTTATCAAT | |
| -104 | 4.6 | ATAGCTAAATTTCTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cmpA | ||||
| Ortholog function: Bicarbontate ABC transporter, substrate-binding protein | ||||
| Cyanothece sp. ATCC 51142 | cce_0305 | -299 | 4.9 | ATAGATAAATACCTAT |
| Cyanothece sp. PCC 7425 | Cyan7425_4925 | -286 | 5.2 | ATAGACTTAGGGCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_3521 | -268 | 4.5 | ATACATATTAAGCTAT |
| Microcystis aeruginosa NIES-843 | MAE_19990 | -104 | 4.6 | ATAGCTAAATTTCTAT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1488 | -186 | 4.9 | ATTGACTTAGCTCTAT |
| Synechococcus sp. JA-3-3Ab | CYA_0894 | -185 | 4.2 | ATAAACGGAAGTCTAT |
| -153 | 4.4 | ATTGTATTGTTTCTAT | ||
| Synechocystis sp. PCC 6803 | slr0040 | -208 | 4.5 | TTGGATATTTATCTAT |
| Thermosynechococcus elongatus BP-1 | null | -124 | 4.1 | ATAGATTGTTTGCAAT |
|
Position: -135
Score: 3.8 Sequence: ATAGATCTTCACCAAT
Locus tag: MAE_23760
|
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| MAE_23760 | -135 | 3.8 | ATAGATCTTCACCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mnhC | ||||
| Ortholog function: Na/H antiporter, subunit C | ||||
| Cyanothece sp. ATCC 51142 | cce_1686 | -232 | 4.5 | ATAGTAATTAGCCTAT |
| -200 | 5 | ATAGAATCTAGTCTAT | ||
| Cyanothece sp. PCC 7425 | Cyan7425_3542 | -121 | 4.7 | ATTTATAAATATCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_2762 | -56 | 4.8 | ATAGGCTTTAAGCTAT |
| -24 | 4.7 | ATAGTTTTTTGTATAT | ||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2373 | -123 | 5.2 | ATAGATATTAAACTAT |
| Synechocystis sp. PCC 6803 | slr2006 | -125 | 3.8 | ATAGAATCTATGCAAT |
| Synechocystis sp. PCC 6803 | slr2008 | -125 | 3.8 | ATAGAATCTATGCAAT |
| Synechocystis sp. PCC 6803 | slr2008 | -107 | 4.3 | ATTGTGATTGGTCTAT |
| Thermosynechococcus elongatus BP-1 | tll1818 | -219 | 5 | ATTGATAAAAATCTAT |
| -193 | 4.4 | ATTGACATTGATCTAA | ||
|
Position: -135
Score: 3.8 Sequence: ATAGATCTTCACCAAT
Locus tag: MAE_23780
|
||||
| MAE_23780 | -135 | 3.8 | ATAGATCTTCACCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mnhC | ||||
| Ortholog function: Na/H antiporter, subunit C | ||||
| Cyanothece sp. ATCC 51142 | cce_1686 | -232 | 4.5 | ATAGTAATTAGCCTAT |
| -200 | 5 | ATAGAATCTAGTCTAT | ||
| Cyanothece sp. PCC 7425 | Cyan7425_3542 | -121 | 4.7 | ATTTATAAATATCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_2762 | -56 | 4.8 | ATAGGCTTTAAGCTAT |
| -24 | 4.7 | ATAGTTTTTTGTATAT | ||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2373 | -123 | 5.2 | ATAGATATTAAACTAT |
| Synechocystis sp. PCC 6803 | slr2006 | -125 | 3.8 | ATAGAATCTATGCAAT |
| Synechocystis sp. PCC 6803 | slr2008 | -125 | 3.8 | ATAGAATCTATGCAAT |
| Synechocystis sp. PCC 6803 | slr2008 | -107 | 4.3 | ATTGTGATTGGTCTAT |
| Thermosynechococcus elongatus BP-1 | tll1818 | -219 | 5 | ATTGATAAAAATCTAT |
| -193 | 4.4 | ATTGACATTGATCTAA | ||
|
Position: -179
Score: 3.8 Sequence: TTTTATTTTTTTCAAT
Position: -156
Score: 3.9 Sequence: ATAGATCCAAAACAAT
Locus tag: MAE_23790
|
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| MAE_23790 | -179 | 3.8 | TTTTATTTTTTTCAAT | |
| -156 | 3.9 | ATAGATCCAAAACAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mnhD | ||||
| Ortholog function: Na/H antiporter, subunit D | ||||
| Cyanothece sp. ATCC 51142 | cce_1685 | -232 | 4.5 | ATAGTAATTAGCCTAT |
| -200 | 5 | ATAGAATCTAGTCTAT | ||
| Cyanothece sp. ATCC 51142 | cce_2494 | -180 | 5.1 | ATTGATTTTAGGCTAT |
| Cyanothece sp. PCC 7425 | Cyan7425_3543 | -121 | 4.7 | ATTTATAAATATCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_2761 | -56 | 4.8 | ATAGGCTTTAAGCTAT |
| -24 | 4.7 | ATAGTTTTTTGTATAT | ||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2374 | -123 | 5.2 | ATAGATATTAAACTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A2375 | -123 | 5.2 | ATAGATATTAAACTAT |
| Synechocystis sp. PCC 6803 | slr2007 | -125 | 3.8 | ATAGAATCTATGCAAT |
| Synechocystis sp. PCC 6803 | slr2009 | -125 | 3.8 | ATAGAATCTATGCAAT |
| Synechocystis sp. PCC 6803 | slr2007 | -107 | 4.3 | ATTGTGATTGGTCTAT |
| Synechocystis sp. PCC 6803 | slr2009 | -107 | 4.3 | ATTGTGATTGGTCTAT |
| Thermosynechococcus elongatus BP-1 | tll1817 | -219 | 5 | ATTGATAAAAATCTAT |
| -193 | 4.4 | ATTGACATTGATCTAA | ||
|
Position: -71
Score: 4.9 Sequence: ATAGACTTTTGACTGT
Locus tag: MAE_30020
|
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| MAE_30020 | -71 | 4.9 | ATAGACTTTTGACTGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpX | ||||
| Ortholog function: Fructose-1,6-bisphosphatase II | ||||
| Cyanothece sp. ATCC 51142 | cce_3974 | -74 | 5 | ATAGACTTTTGACTAA |
| Cyanothece sp. PCC 8801 | PCC8801_3646 | -74 | 5 | ATAGACTTTTGACTAA |
| Microcystis aeruginosa NIES-843 | MAE_30020 | -71 | 4.9 | ATAGACTTTTGACTGT |
| Synechocystis sp. PCC 6803 | slr2094 | -71 | 5.6 | ATAGACTTTTGACTAT |
|
Position: -14
Score: 3.8 Sequence: ATCGAGTCAAGTTTAT
Position: 34
Score: 3.9 Sequence: ATAATTTTAAAACTCT
Locus tag: MAE_54040
|
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| MAE_54040 | -14 | 3.8 | ATCGAGTCAAGTTTAT | |
| 34 | 3.9 | ATAATTTTAAAACTCT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cupS | ||||
| Ortholog function: CO2 uptake transporter, small subunit | ||||
| Gloeobacter violaceus PCC 7421 | glr1006 | -139 | 5 | ATCTACTTTTATCTAT |
| Nostoc sp. PCC 7120 | alr1320 | 34 | 4.4 | ATAGTTTTAAAACTCT |
| Synechococcus sp. JA-3-3Ab | CYA_0636 | -107 | 5 | CTTGATTTTTGTCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0175 | -63 | 5 | ATTGACTCTAGTCTAT |
| Synechocystis sp. PCC 6803 | sll1735 | -204 | 3.9 | ATTGTCGCTTGACTAT |
|
Position: -207
Score: 4.9 Sequence: ATTGTTATAAATCTAT
Position: -122
Score: 4.9 Sequence: ATTGATTTAAACCTAT
Locus tag: MAE_62070
|
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| MAE_62070 | -207 | 4.9 | ATTGTTATAAATCTAT | |
| -122 | 4.9 | ATTGATTTAAACCTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmR | ||||
| Ortholog function: Carbon assimilation transcriptional regulator, LysR family | ||||
| Cyanothece sp. ATCC 51142 | cce_3731 | -133 | 4.3 | ATAGATTTATTTCAAC |
| -101 | 4.8 | ATGGAAATAAGTCTAT | ||
| Cyanothece sp. PCC 8801 | PCC8801_3406 | -144 | 4.4 | ATAGAATTTAATCAAA |
| -112 | 4.8 | ATTGTATTTAATCTAT | ||
| Microcystis aeruginosa NIES-843 | MAE_62070 | -238 | 4.3 | ATAGACAAAACTTTAT |
| -207 | 4.9 | ATTGTTATAAATCTAT | ||
| -122 | 4.9 | ATTGATTTAAACCTAT | ||
| Microcystis aeruginosa NIES-843 | MAE_15110 | -71 | 4.9 | ATTGACTAGAATCTAT |
| Synechocystis sp. PCC 6803 | sll1594 | -240 | 4.7 | ATTGGCTTTATTCTAT |
| -179 | 4.8 | ATAGCCATAGGTCTAT | ||
|
Position: -111
Score: 4.9 Sequence: ATAGATTTATAACAAT
Position: -80
Score: 5 Sequence: ATAAAGTTTTGTCTAT
Locus tag: MAE_62080
|
||||
| MAE_62080 | -111 | 4.9 | ATAGATTTATAACAAT | |
| -80 | 5 | ATAAAGTTTTGTCTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Synpcc7942_2328 | ||||
| Ortholog function: Predicted permease | ||||
| Microcystis aeruginosa NIES-843 | MAE_62080 | -196 | 4.7 | ATAGGTTTAAATCAAT |
| -111 | 4.9 | ATAGATTTATAACAAT | ||
| -80 | 5 | ATAAAGTTTTGTCTAT | ||