Propagation of CcmR regulog to Microcystis aeruginosa NIES-843

Reference regulog properties
Source regulog:	CcmR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Microcystis aeruginosa NIES-843
Orthologous TF(s)	MAE_62070, MAE_15110
Regulated genes	11

Built upon 72 sites [see more]

Predicted regulatory interactions in *Microcystis aeruginosa NIES-843*
	Locus tag	Position	Score	Sequence
Position: -71 Score: 4.9 Sequence: ATTGACTAGAATCTAT Locus tag: MAE_15110
	MAE_15110	-71	4.9	ATTGACTAGAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. ATCC 51142	cce_3731	-133	4.3	ATAGATTTATTTCAAC
		-101	4.8	ATGGAAATAAGTCTAT
Cyanothece sp. PCC 8801	PCC8801_3406	-144	4.4	ATAGAATTTAATCAAA
		-112	4.8	ATTGTATTTAATCTAT
Microcystis aeruginosa NIES-843	MAE_62070	-238	4.3	ATAGACAAAACTTTAT
		-207	4.9	ATTGTTATAAATCTAT
		-122	4.9	ATTGATTTAAACCTAT
Microcystis aeruginosa NIES-843	MAE_15110	-71	4.9	ATTGACTAGAATCTAT
Synechocystis sp. PCC 6803	sll1594	-240	4.7	ATTGGCTTTATTCTAT
		-179	4.8	ATAGCCATAGGTCTAT

Position: -219 Score: 4 Sequence: ATTAATTCTTATCAAT Position: -104 Score: 4.6 Sequence: ATAGCTAAATTTCTAT Locus tag: MAE_19990
	MAE_19990	-219	4	ATTAATTCTTATCAAT
		-104	4.6	ATAGCTAAATTTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142	cce_0305	-299	4.9	ATAGATAAATACCTAT
Cyanothece sp. PCC 7425	Cyan7425_4925	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_3521	-268	4.5	ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843	MAE_19990	-104	4.6	ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1488	-186	4.9	ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0894	-185	4.2	ATAAACGGAAGTCTAT
		-153	4.4	ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803	slr0040	-208	4.5	TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1	null	-124	4.1	ATAGATTGTTTGCAAT

Position: -135 Score: 3.8 Sequence: ATAGATCTTCACCAAT Locus tag: MAE_23760
	MAE_23760	-135	3.8	ATAGATCTTCACCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhC
Ortholog function: Na/H antiporter, subunit C
Cyanothece sp. ATCC 51142	cce_1686	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425	Cyan7425_3542	-121	4.7	ATTTATAAATATCTAT
Cyanothece sp. PCC 8801	PCC8801_2762	-56	4.8	ATAGGCTTTAAGCTAT
		-24	4.7	ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2373	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	slr2006	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2008	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2008	-107	4.3	ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1	tll1818	-219	5	ATTGATAAAAATCTAT
		-193	4.4	ATTGACATTGATCTAA

Position: -135 Score: 3.8 Sequence: ATAGATCTTCACCAAT Locus tag: MAE_23780
	MAE_23780	-135	3.8	ATAGATCTTCACCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhC
Ortholog function: Na/H antiporter, subunit C
Cyanothece sp. ATCC 51142	cce_1686	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425	Cyan7425_3542	-121	4.7	ATTTATAAATATCTAT
Cyanothece sp. PCC 8801	PCC8801_2762	-56	4.8	ATAGGCTTTAAGCTAT
		-24	4.7	ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2373	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	slr2006	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2008	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2008	-107	4.3	ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1	tll1818	-219	5	ATTGATAAAAATCTAT
		-193	4.4	ATTGACATTGATCTAA

Position: -179 Score: 3.8 Sequence: TTTTATTTTTTTCAAT Position: -156 Score: 3.9 Sequence: ATAGATCCAAAACAAT Locus tag: MAE_23790
	MAE_23790	-179	3.8	TTTTATTTTTTTCAAT
		-156	3.9	ATAGATCCAAAACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhD
Ortholog function: Na/H antiporter, subunit D
Cyanothece sp. ATCC 51142	cce_1685	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT
Cyanothece sp. ATCC 51142	cce_2494	-180	5.1	ATTGATTTTAGGCTAT
Cyanothece sp. PCC 7425	Cyan7425_3543	-121	4.7	ATTTATAAATATCTAT
Cyanothece sp. PCC 8801	PCC8801_2761	-56	4.8	ATAGGCTTTAAGCTAT
		-24	4.7	ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2374	-123	5.2	ATAGATATTAAACTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A2375	-123	5.2	ATAGATATTAAACTAT
Synechocystis sp. PCC 6803	slr2007	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2009	-125	3.8	ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803	slr2007	-107	4.3	ATTGTGATTGGTCTAT
Synechocystis sp. PCC 6803	slr2009	-107	4.3	ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1	tll1817	-219	5	ATTGATAAAAATCTAT
		-193	4.4	ATTGACATTGATCTAA

Position: -71 Score: 4.9 Sequence: ATAGACTTTTGACTGT Locus tag: MAE_30020
	MAE_30020	-71	4.9	ATAGACTTTTGACTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpX
Ortholog function: Fructose-1,6-bisphosphatase II
Cyanothece sp. ATCC 51142	cce_3974	-74	5	ATAGACTTTTGACTAA
Cyanothece sp. PCC 8801	PCC8801_3646	-74	5	ATAGACTTTTGACTAA
Microcystis aeruginosa NIES-843	MAE_30020	-71	4.9	ATAGACTTTTGACTGT
Synechocystis sp. PCC 6803	slr2094	-71	5.6	ATAGACTTTTGACTAT

Position: -14 Score: 3.8 Sequence: ATCGAGTCAAGTTTAT Position: 34 Score: 3.9 Sequence: ATAATTTTAAAACTCT Locus tag: MAE_54040
	MAE_54040	-14	3.8	ATCGAGTCAAGTTTAT
		34	3.9	ATAATTTTAAAACTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cupS
Ortholog function: CO2 uptake transporter, small subunit
Gloeobacter violaceus PCC 7421	glr1006	-139	5	ATCTACTTTTATCTAT
Nostoc sp. PCC 7120	alr1320	34	4.4	ATAGTTTTAAAACTCT
Synechococcus sp. JA-3-3Ab	CYA_0636	-107	5	CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0175	-63	5	ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803	sll1735	-204	3.9	ATTGTCGCTTGACTAT

Position: -207 Score: 4.9 Sequence: ATTGTTATAAATCTAT Position: -122 Score: 4.9 Sequence: ATTGATTTAAACCTAT Locus tag: MAE_62070
	MAE_62070	-207	4.9	ATTGTTATAAATCTAT
		-122	4.9	ATTGATTTAAACCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. ATCC 51142	cce_3731	-133	4.3	ATAGATTTATTTCAAC
		-101	4.8	ATGGAAATAAGTCTAT
Cyanothece sp. PCC 8801	PCC8801_3406	-144	4.4	ATAGAATTTAATCAAA
		-112	4.8	ATTGTATTTAATCTAT
Microcystis aeruginosa NIES-843	MAE_62070	-238	4.3	ATAGACAAAACTTTAT
		-207	4.9	ATTGTTATAAATCTAT
		-122	4.9	ATTGATTTAAACCTAT
Microcystis aeruginosa NIES-843	MAE_15110	-71	4.9	ATTGACTAGAATCTAT
Synechocystis sp. PCC 6803	sll1594	-240	4.7	ATTGGCTTTATTCTAT
		-179	4.8	ATAGCCATAGGTCTAT

Position: -111 Score: 4.9 Sequence: ATAGATTTATAACAAT Position: -80 Score: 5 Sequence: ATAAAGTTTTGTCTAT Locus tag: MAE_62080
	MAE_62080	-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Synpcc7942_2328
Ortholog function: Predicted permease
Microcystis aeruginosa NIES-843	MAE_62080	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CcmR regulog to Microcystis aeruginosa NIES-843

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --